Hb_012305_030

Information

Type -
Description -
Location Contig12305: 17231-31891
Sequence    

Annotation

kegg
ID gmx:100818665
description PH-interacting protein-like
nr
ID KDP27899.1
description hypothetical protein JCGZ_18979 [Jatropha curcas]
swissprot
ID Q921C3
description Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2
trembl
ID K7MBB5
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06999: 17460-20098 , PASA_asmbl_07002: 18681-19264 , PASA_asmbl_07003: 20469-22204 , PASA_asmbl_07004: 22412-26001 , PASA_asmbl_07005: 22588-26146 , PASA_asmbl_07006: 27398-32144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_030 0.0 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
2 Hb_002085_030 0.0463695946 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
3 Hb_140049_040 0.0611212973 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
4 Hb_004976_010 0.0650900704 - - hypothetical protein RCOM_1429110 [Ricinus communis]
5 Hb_004236_050 0.0661954793 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
6 Hb_000914_120 0.0664606006 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
7 Hb_012194_030 0.0670441065 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
8 Hb_003929_280 0.0677163472 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
9 Hb_000527_010 0.0677233622 - - katanin P80 subunit, putative [Ricinus communis]
10 Hb_003470_080 0.0697969772 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
11 Hb_000230_090 0.0700241566 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
12 Hb_001231_090 0.0707899287 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
13 Hb_000243_210 0.0708133909 - - protein with unknown function [Ricinus communis]
14 Hb_001767_140 0.071257335 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
15 Hb_000836_410 0.0721481529 - - sec10, putative [Ricinus communis]
16 Hb_000329_370 0.0727942824 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
17 Hb_001089_030 0.0753649151 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
18 Hb_000170_150 0.0755345738 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
19 Hb_002542_130 0.0760733635 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
20 Hb_000645_170 0.0760792161 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012305_030 Hb_012305_030 Hb_002085_030 Hb_002085_030 Hb_012305_030--Hb_002085_030 Hb_140049_040 Hb_140049_040 Hb_012305_030--Hb_140049_040 Hb_004976_010 Hb_004976_010 Hb_012305_030--Hb_004976_010 Hb_004236_050 Hb_004236_050 Hb_012305_030--Hb_004236_050 Hb_000914_120 Hb_000914_120 Hb_012305_030--Hb_000914_120 Hb_012194_030 Hb_012194_030 Hb_012305_030--Hb_012194_030 Hb_002085_030--Hb_012194_030 Hb_003866_080 Hb_003866_080 Hb_002085_030--Hb_003866_080 Hb_001767_140 Hb_001767_140 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_000329_370 Hb_000329_370 Hb_002085_030--Hb_000329_370 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_003929_280 Hb_003929_280 Hb_004236_050--Hb_003929_280 Hb_004837_180 Hb_004837_180 Hb_004236_050--Hb_004837_180 Hb_000645_170 Hb_000645_170 Hb_004236_050--Hb_000645_170 Hb_003927_040 Hb_003927_040 Hb_004236_050--Hb_003927_040 Hb_007590_020 Hb_007590_020 Hb_004236_050--Hb_007590_020 Hb_000914_120--Hb_000230_090 Hb_008695_110 Hb_008695_110 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_000914_120--Hb_001767_140 Hb_012194_030--Hb_000329_370 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_003835_070 Hb_003835_070 Hb_012194_030--Hb_003835_070 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4037 15.1084 10.1345 7.92536 10.1454 11.598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39487 8.29242 5.68443 8.52019 12.2078

CAGE analysis