Hb_001268_280

Information

Type -
Description -
Location Contig1268: 273239-288012
Sequence    

Annotation

kegg
ID rcu:RCOM_1446810
description hypothetical protein
nr
ID XP_002512894.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CSU0
description Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus GN=Rprd1b PE=1 SV=2
trembl
ID B9RH35
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08113: 273406-287544 , PASA_asmbl_08115: 276588-276962 , PASA_asmbl_08117: 287581-288020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000914_120 0.0600866545 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
3 Hb_002267_140 0.0616608224 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
4 Hb_000162_030 0.0639331467 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
5 Hb_001318_070 0.0641855502 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
6 Hb_002732_040 0.0642103171 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
7 Hb_000243_210 0.0652776878 - - protein with unknown function [Ricinus communis]
8 Hb_001635_040 0.0666474006 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_000879_040 0.0667691876 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
10 Hb_007747_040 0.0672236082 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
11 Hb_000214_050 0.0677330193 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
12 Hb_000044_040 0.067780089 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_001767_140 0.0684429549 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
14 Hb_012395_140 0.0689732037 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
15 Hb_002205_250 0.0697848437 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
16 Hb_001377_110 0.0705704082 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
17 Hb_001269_210 0.0718008509 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
18 Hb_000671_070 0.0725352529 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
19 Hb_053079_020 0.0727581364 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
20 Hb_004097_070 0.0729041668 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]

Gene co-expression network

sample Hb_001268_280 Hb_001268_280 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210 Hb_000230_090 Hb_000230_090 Hb_000914_120--Hb_000230_090 Hb_008695_110 Hb_008695_110 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_008568_020 Hb_008568_020 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_000162_030--Hb_002276_240 Hb_001318_070--Hb_000243_210 Hb_000879_040 Hb_000879_040 Hb_001318_070--Hb_000879_040 Hb_000099_040 Hb_000099_040 Hb_001318_070--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_001318_070--Hb_000174_060 Hb_002205_250 Hb_002205_250 Hb_001318_070--Hb_002205_250 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_000243_210--Hb_000099_040 Hb_000243_210--Hb_000174_060 Hb_000243_210--Hb_000671_070 Hb_000243_210--Hb_002205_250 Hb_000243_210--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8754 10.9181 10.1312 8.17786 9.18 11.6925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15018 4.70893 7.21376 8.40174 10.4566

CAGE analysis