Hb_001635_040

Information

Type -
Description -
Location Contig1635: 35172-46117
Sequence    

Annotation

kegg
ID cam:101503556
description serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
nr
ID XP_012470122.1
description PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
swissprot
ID Q39247
description Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=1 SV=1
trembl
ID A0A0D2NX13
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G060000 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14930: 35406-45698 , PASA_asmbl_14931: 35187-46059 , PASA_asmbl_14932: 41937-42834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_040 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
2 Hb_001751_140 0.0475523177 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
3 Hb_000162_030 0.0493110898 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
4 Hb_008568_020 0.0518732748 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
5 Hb_001005_030 0.0577531038 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
6 Hb_000777_050 0.0639156141 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
7 Hb_138596_010 0.0654263702 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
8 Hb_002078_110 0.065558005 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
9 Hb_002684_040 0.0659972453 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
10 Hb_001268_280 0.0666474006 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011310_130 0.0669599854 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
12 Hb_003861_050 0.0677913322 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
13 Hb_004097_070 0.0680833435 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
14 Hb_008695_110 0.0717392452 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
15 Hb_143766_110 0.0734949068 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
16 Hb_003638_090 0.07387586 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
17 Hb_000035_110 0.0739875349 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
18 Hb_000309_040 0.074280835 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
19 Hb_001377_310 0.0743198682 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
20 Hb_032202_080 0.0745014785 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_040 Hb_001635_040 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_003927_040 Hb_003927_040 Hb_001751_140--Hb_003927_040 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001751_140--Hb_000803_070 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_001268_280 Hb_001268_280 Hb_000162_030--Hb_001268_280 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_002276_240 Hb_002276_240 Hb_000162_030--Hb_002276_240 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050 Hb_002267_140 Hb_002267_140 Hb_138596_010--Hb_002267_140 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_000479_220 Hb_000479_220 Hb_138596_010--Hb_000479_220 Hb_002843_120 Hb_002843_120 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5514 21.3355 26.3823 17.9481 21.0935 24.9963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9256 13.2996 15.0122 14.7573 15.7885

CAGE analysis