Hb_001751_140

Information

Type -
Description -
Location Contig1751: 187180-201444
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02940g
description hypothetical protein
nr
ID XP_012090316.1
description PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5G2Y4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23830g PE=4 SV=1
Gene Ontology
ID GO:0005768
description udp-glycosyltransferase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16761: 187414-192374 , PASA_asmbl_16762: 193332-193796 , PASA_asmbl_16763: 196556-196686 , PASA_asmbl_16764: 197158-198513 , PASA_asmbl_16765: 200502-201474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001751_140 0.0 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
2 Hb_001635_040 0.0475523177 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
3 Hb_003927_040 0.0538427567 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
4 Hb_008568_020 0.0579531418 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
5 Hb_000076_160 0.0605568827 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
6 Hb_001728_050 0.0612092655 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
7 Hb_000803_070 0.0632721186 - - PREDICTED: protein TRAUCO [Jatropha curcas]
8 Hb_003929_280 0.0640679855 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
9 Hb_002872_030 0.066548744 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
10 Hb_032264_060 0.0672549048 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
11 Hb_002078_110 0.0676775516 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_005653_090 0.0680037479 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
13 Hb_000309_040 0.0703568 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
14 Hb_000260_680 0.0707067829 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
15 Hb_000645_170 0.0710932048 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000679_310 0.0714924888 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
17 Hb_003096_060 0.0715864067 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
18 Hb_003861_050 0.0727761477 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
19 Hb_000162_030 0.0727826123 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
20 Hb_012384_030 0.0730443071 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001751_140 Hb_001751_140 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_003927_040 Hb_003927_040 Hb_001751_140--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001751_140--Hb_000803_070 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_003929_280 Hb_003929_280 Hb_003927_040--Hb_003929_280 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001728_050--Hb_000803_070 Hb_004357_020 Hb_004357_020 Hb_001728_050--Hb_004357_020 Hb_001247_130 Hb_001247_130 Hb_001728_050--Hb_001247_130 Hb_001728_050--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_001728_050--Hb_032264_060 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_000803_070--Hb_032264_060 Hb_000803_070--Hb_003929_280 Hb_000803_070--Hb_003927_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80098 4.70647 4.68965 3.38878 3.58152 4.29766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9325 3.32276 2.62607 2.72452 2.7863

CAGE analysis