Hb_060094_020

Information

Type desease resistance
Description Gene Name: ATP_bind_1
Location Contig60094: 15154-18218
Sequence    

Annotation

kegg
ID rcu:RCOM_1775060
description xpa-binding protein, putative
nr
ID XP_002512187.1
description xpa-binding protein, putative [Ricinus communis]
swissprot
ID Q54C25
description GPN-loop GTPase 1 OS=Dictyostelium discoideum GN=gpn1 PE=3 SV=1
trembl
ID B9REL8
description Xpa-binding protein, putative OS=Ricinus communis GN=RCOM_1775060 PE=4 SV=1
Gene Ontology
ID GO:0005874
description gpn-loop gtpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50576: 14852-15653 , PASA_asmbl_50577: 15172-18475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060094_020 0.0 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
2 Hb_023226_070 0.0549884493 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003927_040 0.0602960339 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
4 Hb_004870_050 0.0623849533 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
5 Hb_000645_170 0.064771185 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001754_030 0.0653163208 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
7 Hb_010417_070 0.0682698163 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
8 Hb_001252_230 0.0684975804 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
9 Hb_001300_010 0.0689433412 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000445_060 0.0689505511 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_001534_210 0.0699995488 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
12 Hb_000861_080 0.0711468427 - - PREDICTED: protein ELC-like [Jatropha curcas]
13 Hb_001430_080 0.0725013222 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
14 Hb_001089_050 0.0732298115 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
15 Hb_000868_120 0.0752157212 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
16 Hb_002085_030 0.075331468 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
17 Hb_004943_030 0.0758049722 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
18 Hb_000094_090 0.076101865 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
19 Hb_002329_020 0.0761852469 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
20 Hb_003866_080 0.0761892635 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]

Gene co-expression network

sample Hb_060094_020 Hb_060094_020 Hb_023226_070 Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_001754_030 Hb_001754_030 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_003929_280 Hb_003929_280 Hb_003927_040--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_003927_040--Hb_000645_170 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_004870_050--Hb_003927_040 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_000645_170--Hb_008568_020 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_000809_160 Hb_000809_160 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_001754_030--Hb_000723_110 Hb_005389_160 Hb_005389_160 Hb_010417_070--Hb_005389_160 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_004410_070 Hb_004410_070 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8573 41.166 36.4691 19.27 19.0403 23.2195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9478 18.5336 19.1811 20.8874 23.0127

CAGE analysis