Hb_032264_060

Information

Type -
Description -
Location Contig32264: 51013-55347
Sequence    

Annotation

kegg
ID rcu:RCOM_0326980
description ubiquitin-protein ligase, putative
nr
ID KDP22664.1
description hypothetical protein JCGZ_02506 [Jatropha curcas]
swissprot
ID Q84K34
description E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1
trembl
ID A0A067JT13
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_02506 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sina-like 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34207: 51083-55282
cDNA
(Sanger)
(ID:Location)		 003_K04.ab1: 51616-55276

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032264_060 0.0 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
2 Hb_000803_070 0.0575948989 - - PREDICTED: protein TRAUCO [Jatropha curcas]
3 Hb_003633_070 0.0629549713 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
4 Hb_003927_040 0.0665936922 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
5 Hb_001140_030 0.0668190619 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
6 Hb_001751_140 0.0672549048 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
7 Hb_001754_030 0.0673167296 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
8 Hb_001636_050 0.0689102093 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
9 Hb_140049_040 0.0710603682 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
10 Hb_000402_120 0.0724694681 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
11 Hb_002477_250 0.0733237614 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
12 Hb_000679_340 0.0735487767 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
13 Hb_000645_170 0.0739529647 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001728_050 0.075251521 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
15 Hb_012384_030 0.0755933141 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
16 Hb_001635_040 0.0760741624 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
17 Hb_000162_030 0.0767237023 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
18 Hb_138596_010 0.0771627132 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
19 Hb_004357_020 0.0777922695 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
20 Hb_002078_110 0.0783165829 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]

Gene co-expression network

sample Hb_032264_060 Hb_032264_060 Hb_000803_070 Hb_000803_070 Hb_032264_060--Hb_000803_070 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_003927_040 Hb_003927_040 Hb_032264_060--Hb_003927_040 Hb_001140_030 Hb_001140_030 Hb_032264_060--Hb_001140_030 Hb_001751_140 Hb_001751_140 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_001728_050 Hb_001728_050 Hb_000803_070--Hb_001728_050 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_000803_070--Hb_001751_140 Hb_000803_070--Hb_003927_040 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_003927_040--Hb_003929_280 Hb_003927_040--Hb_001751_140 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_010998_040 Hb_010998_040 Hb_001140_030--Hb_010998_040 Hb_004631_190 Hb_004631_190 Hb_001140_030--Hb_004631_190 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001405_190 Hb_001405_190 Hb_001140_030--Hb_001405_190 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_001751_140--Hb_001728_050 Hb_000809_160 Hb_000809_160 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_023226_070 Hb_023226_070 Hb_001754_030--Hb_023226_070 Hb_001754_030--Hb_060094_020 Hb_000723_110 Hb_000723_110 Hb_001754_030--Hb_000723_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8567 21.2153 17.9224 10.6446 17.4087 12.7262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2649 10.1689 10.2578 9.59014 11.0474

CAGE analysis