Hb_003633_070

Information

Type -
Description -
Location Contig3633: 69734-76038
Sequence    

Annotation

kegg
ID rcu:RCOM_1433520
description DNA binding protein, putative
nr
ID XP_012088997.1
description PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FUE4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01710g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37358: 69973-70205 , PASA_asmbl_37359: 73415-73668 , PASA_asmbl_37360: 73751-74081 , PASA_asmbl_37361: 71415-73721 , PASA_asmbl_37362: 73415-73721 , PASA_asmbl_37363: 70343-76037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_070 0.0 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
2 Hb_001799_050 0.0511589373 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
3 Hb_000418_140 0.0538189214 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
4 Hb_009112_010 0.0549359492 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
5 Hb_000162_280 0.0602896163 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
6 Hb_001143_250 0.0610488692 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
7 Hb_000640_310 0.061689125 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
8 Hb_000556_170 0.0625572807 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
9 Hb_032264_060 0.0629549713 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
10 Hb_000679_340 0.0644954762 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
11 Hb_001767_140 0.0647216802 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
12 Hb_140049_040 0.0653455638 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
13 Hb_000230_090 0.0656775128 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
14 Hb_002325_040 0.0663441555 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
15 Hb_111198_010 0.0675755001 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
16 Hb_000103_100 0.0689977643 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
17 Hb_000169_130 0.0706725343 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_004357_020 0.0706766066 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
19 Hb_001147_110 0.0709437665 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
20 Hb_005965_030 0.0734425135 - - hypothetical protein JCGZ_16415 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_070 Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_000160_350 Hb_000160_350 Hb_001799_050--Hb_000160_350 Hb_001799_050--Hb_001143_250 Hb_000418_140--Hb_001143_250 Hb_000418_140--Hb_000162_280 Hb_000418_140--Hb_009112_010 Hb_000796_190 Hb_000796_190 Hb_000418_140--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000418_140--Hb_007558_120 Hb_009112_010--Hb_000162_280 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_006615_120 Hb_006615_120 Hb_009112_010--Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1689 43.8621 29.3003 19.1751 34.5012 34.1033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2536 16.7465 17.7888 22.8994 18.6655

CAGE analysis