Hb_007558_120

Information

Type transcription factor
Description TF Family: IWS1
Location Contig7558: 82912-85715
Sequence    

Annotation

kegg
ID rcu:RCOM_1058130
description transcription elongation factor s-II, putative
nr
ID XP_002528699.1
description transcription elongation factor s-II, putative [Ricinus communis]
swissprot
ID Q9ZVH8
description Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1
trembl
ID B9SRT6
description Transcription elongation factor s-II, putative OS=Ricinus communis GN=RCOM_1058130 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor a protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57040: 82967-86013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_120 0.0 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
2 Hb_000796_190 0.0509107681 - - hypothetical protein F383_31148 [Gossypium arboreum]
3 Hb_003680_230 0.0542507896 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
4 Hb_000329_130 0.0604291395 - - beta-tubulin cofactor d, putative [Ricinus communis]
5 Hb_006816_050 0.0626349002 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
6 Hb_004635_050 0.0631785466 - - nucleolar phosphoprotein, putative [Ricinus communis]
7 Hb_002042_140 0.0653986416 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
8 Hb_001454_320 0.0661510379 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
9 Hb_000300_360 0.0672135952 - - PREDICTED: exosome component 10 [Jatropha curcas]
10 Hb_000777_050 0.0684625042 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
11 Hb_001235_200 0.068524567 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000418_140 0.0687151243 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
13 Hb_004429_160 0.0688665609 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
14 Hb_007982_070 0.070177875 - - PREDICTED: protein CPR-5 [Jatropha curcas]
15 Hb_005892_030 0.0707425826 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
16 Hb_007943_120 0.0717776729 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
17 Hb_007520_030 0.0727150505 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
18 Hb_002174_020 0.0730310265 - - ring finger protein, putative [Ricinus communis]
19 Hb_001143_250 0.0734112144 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
20 Hb_010695_020 0.0740413393 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007558_120 Hb_007558_120 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_000291_060 Hb_000291_060 Hb_006816_050--Hb_000291_060 Hb_001143_180 Hb_001143_180 Hb_006816_050--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_004635_050--Hb_007943_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_005883_010 Hb_005883_010 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020 Hb_006831_110 Hb_006831_110 Hb_002042_140--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_002042_140--Hb_000002_040 Hb_004128_050 Hb_004128_050 Hb_002042_140--Hb_004128_050 Hb_010695_020 Hb_010695_020 Hb_002042_140--Hb_010695_020 Hb_000743_040 Hb_000743_040 Hb_002042_140--Hb_000743_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.5129 65.7501 47.4093 37.6369 84.2657 79.8516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.7444 29.4253 30.7875 42.6746 36.8593

CAGE analysis