Hb_140049_020

Information

Type -
Description -
Location Contig140049: 5462-12941
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09560g
description POPTRDRAFT_769296; RNA pol 2 accessory factor Cdc73 family protein
nr
ID XP_012066375.1
description PREDICTED: cell division cycle protein 73 [Jatropha curcas]
swissprot
ID Q9LJ87
description Hsp90 co-chaperone CDC37 OS=Arabidopsis thaliana GN=CDC37 PE=1 SV=1
trembl
ID A0A067L3D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23918 PE=4 SV=1
Gene Ontology
ID GO:0005634
description parafibromin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10891: 4729-5021 , PASA_asmbl_10892: 5477-10962 , PASA_asmbl_10893: 5541-11463 , PASA_asmbl_10894: 11683-12131 , PASA_asmbl_10895: 12207-12388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140049_020 0.0 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
2 Hb_000313_340 0.0505275018 - - DNA repair protein xp-E, putative [Ricinus communis]
3 Hb_019153_020 0.0538930963 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
4 Hb_005539_190 0.0542513949 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
5 Hb_000329_130 0.0584945852 - - beta-tubulin cofactor d, putative [Ricinus communis]
6 Hb_007229_040 0.0606442662 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
7 Hb_000363_130 0.0624895828 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
8 Hb_000300_360 0.0633818151 - - PREDICTED: exosome component 10 [Jatropha curcas]
9 Hb_147737_010 0.0636725225 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
10 Hb_003540_160 0.0647802539 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
11 Hb_000320_380 0.0650320697 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
12 Hb_000417_160 0.0658097118 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
13 Hb_010315_090 0.0667896852 - - suppressor of ty, putative [Ricinus communis]
14 Hb_000032_010 0.0688528656 - - crooked neck protein, putative [Ricinus communis]
15 Hb_001946_300 0.069504942 - - PREDICTED: F-box protein At-B [Jatropha curcas]
16 Hb_007885_070 0.0704475506 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
17 Hb_000120_610 0.0714540545 - - mitotic control protein dis3, putative [Ricinus communis]
18 Hb_140049_030 0.0740591784 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
19 Hb_000264_100 0.0747115177 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000753_100 0.0747632219 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_140049_020 Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000313_340--Hb_000363_130 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_003040_020 Hb_003040_020 Hb_005539_190--Hb_003040_020 Hb_003540_160 Hb_003540_160 Hb_005539_190--Hb_003540_160 Hb_005539_190--Hb_000032_010 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_000329_130--Hb_010315_090 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_001117_190 Hb_001117_190 Hb_007229_040--Hb_001117_190 Hb_005883_010 Hb_005883_010 Hb_007229_040--Hb_005883_010 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_005188_060 Hb_005188_060 Hb_007229_040--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_007229_040--Hb_007943_120 Hb_000363_130--Hb_001946_300 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7551 19.3207 9.73416 5.89469 24.2997 21.1556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.39139 6.25295 8.12044 11.6679 7.22027

CAGE analysis