Hb_000417_160

Information

Type -
Description -
Location Contig417: 119862-129722
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07120g
description POPTRDRAFT_886887; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012091804.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
swissprot
ID C0LGU5
description Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1
trembl
ID B9I1J1
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0011s07120g PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g45780 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41236: 120031-124836 , PASA_asmbl_41237: 122454-122652 , PASA_asmbl_41238: 121143-121296 , PASA_asmbl_41239: 125170-125333 , PASA_asmbl_41240: 125537-126365 , PASA_asmbl_41241: 126858-128226 , PASA_asmbl_41242: 128230-129491
cDNA
(Sanger)
(ID:Location)		 002_H17.ab1: 120125-122747 , 023_C11.ab1: 120125-122697

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_160 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
2 Hb_007885_070 0.0566664557 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
3 Hb_019153_020 0.0603878763 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
4 Hb_000510_310 0.0610509909 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
5 Hb_147737_010 0.0645326985 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
6 Hb_002221_050 0.0650095722 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
7 Hb_000329_130 0.0654592321 - - beta-tubulin cofactor d, putative [Ricinus communis]
8 Hb_140049_020 0.0658097118 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
9 Hb_000424_010 0.0677004805 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
10 Hb_000035_040 0.0692393388 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
11 Hb_000529_260 0.0704867113 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
12 Hb_000313_340 0.0732015028 - - DNA repair protein xp-E, putative [Ricinus communis]
13 Hb_000343_210 0.073760792 - - ran-binding protein, putative [Ricinus communis]
14 Hb_002652_040 0.0769927226 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_002675_040 0.0786614983 - - ran-binding protein, putative [Ricinus communis]
16 Hb_000567_010 0.0797454575 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
17 Hb_010315_090 0.0800398692 - - suppressor of ty, putative [Ricinus communis]
18 Hb_000320_200 0.0808402659 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
19 Hb_002255_050 0.0818640505 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_000320_380 0.0825151291 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_160 Hb_000417_160 Hb_007885_070 Hb_007885_070 Hb_000417_160--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000417_160--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000417_160--Hb_000510_310 Hb_147737_010 Hb_147737_010 Hb_000417_160--Hb_147737_010 Hb_002221_050 Hb_002221_050 Hb_000417_160--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_000417_160--Hb_000329_130 Hb_007885_070--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_019153_020--Hb_002221_050 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000510_310--Hb_000645_120 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_002221_050--Hb_015026_050 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_000329_130--Hb_010315_090 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.84 73.0652 36.5793 40.2596 125.562 97.3081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.0978 25.6401 47.3745 58.1298 31.068

CAGE analysis