Hb_000510_310

Information

Type transcription factor
Description TF Family: bHLH
Location Contig510: 293386-299468
Sequence    

Annotation

kegg
ID rcu:RCOM_0991590
description DNA binding protein, putative
nr
ID XP_012092122.1
description PREDICTED: transcription factor UNE12-like [Jatropha curcas]
swissprot
ID O22768
description Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2
trembl
ID A0A067JPB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21845 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor une12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46311: 293971-295314 , PASA_asmbl_46313: 298914-299402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_310 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
2 Hb_006252_020 0.0607053446 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
3 Hb_000417_160 0.0610509909 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
4 Hb_000046_010 0.0627396252 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
5 Hb_000567_010 0.0636813239 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
6 Hb_000107_500 0.0653470347 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
7 Hb_000645_120 0.0664661944 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
8 Hb_000529_260 0.0665160215 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
9 Hb_000283_070 0.0673132647 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
10 Hb_002304_090 0.0675117843 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
11 Hb_000173_510 0.0683523565 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
12 Hb_001454_280 0.0684704768 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
13 Hb_004162_280 0.0688090577 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
14 Hb_003935_030 0.0688216159 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
15 Hb_002221_050 0.0699232891 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
16 Hb_001140_350 0.0711425753 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
17 Hb_010193_050 0.0720699358 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000424_010 0.0729949691 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
19 Hb_007520_030 0.073146107 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
20 Hb_006586_050 0.0734251556 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_310 Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000510_310--Hb_000645_120 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_007885_070 Hb_007885_070 Hb_000417_160--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000417_160--Hb_019153_020 Hb_147737_010 Hb_147737_010 Hb_000417_160--Hb_147737_010 Hb_002221_050 Hb_002221_050 Hb_000417_160--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_000417_160--Hb_000329_130 Hb_001718_090 Hb_001718_090 Hb_000046_010--Hb_001718_090 Hb_000441_070 Hb_000441_070 Hb_000046_010--Hb_000441_070 Hb_000025_360 Hb_000025_360 Hb_000046_010--Hb_000025_360 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_000283_070 Hb_000283_070 Hb_000107_500--Hb_000283_070 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_006831_110 Hb_006831_110 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000107_500--Hb_000025_360 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_003124_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6747 32.0551 14.3714 17.1034 45.8449 40.7729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3379 16.1594 21.4896 24.3566 11.4065

CAGE analysis