Hb_001140_350

Information

Type -
Description -
Location Contig1140: 297839-307201
Sequence    

Annotation

kegg
ID rcu:RCOM_1495680
description DNA-directed RNA polymerase III 62 kDa polypeptide, putative
nr
ID XP_012090252.1
description PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
swissprot
ID Q7ZUX1
description DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio GN=polr3c PE=2 SV=1
trembl
ID A0A067JEI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26102 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase iii subunit rpc3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04216: 304732-306470 , PASA_asmbl_04217: 306579-306920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_350 0.0 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
2 Hb_001454_280 0.0427917901 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
3 Hb_000645_120 0.0614423666 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
4 Hb_080313_010 0.0622428669 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
5 Hb_000648_100 0.0626357366 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
6 Hb_000510_310 0.0711425753 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_003605_130 0.0725255529 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
8 Hb_010053_030 0.0742406114 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
9 Hb_002174_020 0.0750173684 - - ring finger protein, putative [Ricinus communis]
10 Hb_001454_320 0.0751714865 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
11 Hb_010193_050 0.0765573567 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003124_130 0.0801608799 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
13 Hb_000836_270 0.0805282404 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
14 Hb_000470_070 0.0809178871 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
15 Hb_000120_430 0.0816647438 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
16 Hb_008159_020 0.0816920236 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
17 Hb_000567_010 0.081722363 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
18 Hb_000700_140 0.0828065929 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
19 Hb_012023_020 0.0828667925 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
20 Hb_005321_020 0.0828947198 - - splicing factor-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001140_350 Hb_001140_350 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_000645_120 Hb_000645_120 Hb_001140_350--Hb_000645_120 Hb_080313_010 Hb_080313_010 Hb_001140_350--Hb_080313_010 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130 Hb_002174_020 Hb_002174_020 Hb_001454_280--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_001454_280--Hb_007635_030 Hb_006252_020 Hb_006252_020 Hb_001454_280--Hb_006252_020 Hb_008112_030 Hb_008112_030 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_003747_010 Hb_003747_010 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_000648_100--Hb_001454_320 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000214_040 Hb_000214_040 Hb_003605_130--Hb_000214_040 Hb_003605_130--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_003605_130--Hb_000933_020 Hb_010193_050 Hb_010193_050 Hb_003605_130--Hb_010193_050 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1093 7.4655 4.39006 7.05476 10.1914 10.8296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54766 4.38372 4.86047 7.80714 3.04409

CAGE analysis