Hb_000933_020

Information

Type -
Description -
Location Contig933: 38075-57659
Sequence    

Annotation

kegg
ID rcu:RCOM_0837850
description hypothetical protein
nr
ID XP_002522488.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I248
description CSC1-like protein At1g69450 OS=Arabidopsis thaliana GN=At1g69450 PE=2 SV=1
trembl
ID B9S919
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837850 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein hyp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62880: 42418-55371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003605_130 0.0575421256 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
3 Hb_000123_090 0.0718144893 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
4 Hb_008864_110 0.0718344879 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_007426_150 0.0730904485 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
6 Hb_000002_490 0.0738306849 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
7 Hb_001195_560 0.0766495774 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
8 Hb_003018_130 0.0792082376 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
9 Hb_001310_110 0.0842449863 - - unnamed protein product [Coffea canephora]
10 Hb_017700_010 0.0848361863 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
11 Hb_000214_040 0.0860233589 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001347_040 0.0872591671 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
13 Hb_002400_470 0.0892073261 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000309_040 0.0900544623 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
15 Hb_011618_080 0.0901808641 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
16 Hb_002835_230 0.0907657373 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_002477_130 0.0914237343 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000640_220 0.0915185449 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
19 Hb_002174_020 0.0918918287 - - ring finger protein, putative [Ricinus communis]
20 Hb_000101_380 0.0920429319 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000933_020 Hb_000933_020 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000123_090 Hb_000123_090 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_007426_150 Hb_007426_150 Hb_000933_020--Hb_007426_150 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_001195_560 Hb_001195_560 Hb_000933_020--Hb_001195_560 Hb_000214_040 Hb_000214_040 Hb_003605_130--Hb_000214_040 Hb_003605_130--Hb_008864_110 Hb_010193_050 Hb_010193_050 Hb_003605_130--Hb_010193_050 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030 Hb_001140_350 Hb_001140_350 Hb_003605_130--Hb_001140_350 Hb_000123_090--Hb_008864_110 Hb_000123_090--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_000123_090--Hb_002400_470 Hb_000123_090--Hb_001195_560 Hb_001047_030 Hb_001047_030 Hb_000123_090--Hb_001047_030 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_007426_150--Hb_001195_560 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_000002_490--Hb_011618_080 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_001195_560--Hb_002823_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9672 5.24079 4.05802 6.48181 10.4716 7.91999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.29605 4.00239 3.74353 3.55911 3.05379

CAGE analysis