Hb_000002_490

Information

Type -
Description -
Location Contig2: 659412-663473
Sequence    

Annotation

kegg
ID rcu:RCOM_0908950
description phosphatidylcholine transfer protein, putative
nr
ID XP_012069777.1
description PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
swissprot
ID P02720
description Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1 SV=1
trembl
ID A0A067L880
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02282 PE=4 SV=1
Gene Ontology
ID GO:0008289
description polyketide cyclase dehydrase and lipid transport superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20122: 659457-663426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_490 0.0 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
2 Hb_003126_100 0.0640719885 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
3 Hb_002311_070 0.0683381814 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
4 Hb_001050_010 0.0730073272 - - Advillin [Gossypium arboreum]
5 Hb_000933_020 0.0738306849 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000718_070 0.0762035772 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011618_080 0.0780663019 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_008556_030 0.0788085671 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
9 Hb_003680_230 0.0800027068 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
10 Hb_028308_010 0.0808284828 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
11 Hb_000868_060 0.0811257515 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
12 Hb_002888_070 0.0822017525 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
13 Hb_000395_020 0.0836453652 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
14 Hb_003605_130 0.0842426092 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
15 Hb_004785_100 0.0846691397 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002749_110 0.0854074164 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
17 Hb_000640_220 0.0854634214 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
18 Hb_000777_050 0.0857970123 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
19 Hb_000480_010 0.0863313795 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003018_130 0.0868430272 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_490 Hb_000002_490 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030 Hb_002311_070--Hb_000718_070 Hb_001077_030 Hb_001077_030 Hb_002311_070--Hb_001077_030 Hb_000576_020 Hb_000576_020 Hb_002311_070--Hb_000576_020 Hb_004631_180 Hb_004631_180 Hb_002311_070--Hb_004631_180 Hb_000309_040 Hb_000309_040 Hb_002311_070--Hb_000309_040 Hb_000868_060 Hb_000868_060 Hb_001050_010--Hb_000868_060 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000123_090 Hb_000123_090 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_007426_150 Hb_007426_150 Hb_000933_020--Hb_007426_150 Hb_001195_560 Hb_001195_560 Hb_000933_020--Hb_001195_560 Hb_000718_070--Hb_001077_030 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_034432_030 Hb_034432_030 Hb_011618_080--Hb_034432_030 Hb_001619_150 Hb_001619_150 Hb_011618_080--Hb_001619_150 Hb_011618_080--Hb_007426_150 Hb_011618_080--Hb_001195_560 Hb_007765_080 Hb_007765_080 Hb_011618_080--Hb_007765_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.322 21.3466 26.6127 24.7237 49.2061 31.6991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4937 12.8288 16.9393 15.9986 15.5012

CAGE analysis