Hb_034432_030

Information

Type -
Description -
Location Contig34432: 35659-48616
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00290g
description POPTRDRAFT_1105799; hypothetical protein
nr
ID XP_012077353.1
description PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID A0A067KDE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07718 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35952: 40502-41288 , PASA_asmbl_35953: 39646-40311 , PASA_asmbl_35954: 41707-42608 , PASA_asmbl_35955: 44066-46072 , PASA_asmbl_35956: 46111-48293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034432_030 0.0 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
2 Hb_001379_110 0.0270969823 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
3 Hb_001047_220 0.0585141434 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
4 Hb_000544_010 0.0655662409 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
5 Hb_011618_080 0.0702611141 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
6 Hb_000975_040 0.0715510499 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
7 Hb_012053_080 0.0725435947 - - AP-2 complex subunit alpha, putative [Ricinus communis]
8 Hb_027380_140 0.0726854222 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
9 Hb_000313_260 0.0740996925 - - auxin:hydrogen symporter, putative [Ricinus communis]
10 Hb_001369_130 0.0741831486 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
11 Hb_000429_220 0.074419376 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
12 Hb_003018_130 0.0750869646 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
13 Hb_000958_140 0.0756518448 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
14 Hb_000853_210 0.0764196194 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
15 Hb_000671_070 0.076723754 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
16 Hb_017700_010 0.077428996 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
17 Hb_001005_030 0.0779141361 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
18 Hb_000462_060 0.0787079793 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
19 Hb_004912_030 0.079528907 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
20 Hb_150651_030 0.0796086837 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_034432_030 Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_034432_030--Hb_001379_110 Hb_001047_220 Hb_001047_220 Hb_034432_030--Hb_001047_220 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_001379_110--Hb_001047_220 Hb_001379_110--Hb_000975_040 Hb_000958_140 Hb_000958_140 Hb_001379_110--Hb_000958_140 Hb_001379_110--Hb_000544_010 Hb_027380_140 Hb_027380_140 Hb_001379_110--Hb_027380_140 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_001047_220--Hb_000975_040 Hb_000665_160 Hb_000665_160 Hb_000544_010--Hb_000665_160 Hb_000076_130 Hb_000076_130 Hb_000544_010--Hb_000076_130 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_001619_150 Hb_001619_150 Hb_011618_080--Hb_001619_150 Hb_000002_490 Hb_000002_490 Hb_011618_080--Hb_000002_490 Hb_007426_150 Hb_007426_150 Hb_011618_080--Hb_007426_150 Hb_001195_560 Hb_001195_560 Hb_011618_080--Hb_001195_560 Hb_007765_080 Hb_007765_080 Hb_011618_080--Hb_007765_080 Hb_000975_040--Hb_000958_140 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_001369_130 Hb_001369_130 Hb_000975_040--Hb_001369_130 Hb_000696_230 Hb_000696_230 Hb_000975_040--Hb_000696_230 Hb_012395_140 Hb_012395_140 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.16808 4.92644 5.5543 5.2801 9.60852 6.48928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67974 3.36454 5.38606 5.12783 6.20711

CAGE analysis