Hb_000076_130

Information

Type -
Description -
Location Contig76: 92617-95618
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13930g
description POPTRDRAFT_888009; hypothetical protein
nr
ID XP_012070765.1
description PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
swissprot
ID P25269
description Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2
trembl
ID A0A067L4R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00836 PE=3 SV=1
Gene Ontology
ID GO:0009570
description tryptophan synthase beta chain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57245: 92629-95675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_130 0.0 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
2 Hb_000665_160 0.054925188 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
3 Hb_000544_010 0.0629932715 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
4 Hb_002909_050 0.0703132221 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004994_380 0.0733872931 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
6 Hb_004963_030 0.0756037895 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_001141_020 0.0765832113 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
8 Hb_010710_070 0.0792608357 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
9 Hb_001444_010 0.0814683589 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
10 Hb_000080_120 0.0824459853 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
11 Hb_023278_010 0.0849613137 - - Chaperone protein DnaJ [Glycine soja]
12 Hb_004032_410 0.0850016165 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
13 Hb_000062_370 0.0857947095 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
14 Hb_188063_020 0.0876291219 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007441_130 0.0879289572 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000804_040 0.0886104425 - - protein with unknown function [Ricinus communis]
17 Hb_002893_070 0.0891705577 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
18 Hb_000679_020 0.0893679175 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
19 Hb_000181_240 0.0902298663 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
20 Hb_001379_110 0.0907943827 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_130 Hb_000076_130 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_000665_160--Hb_000544_010 Hb_000665_160--Hb_002909_050 Hb_000107_400 Hb_000107_400 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_002893_070 Hb_002893_070 Hb_000665_160--Hb_002893_070 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_010710_080 Hb_010710_080 Hb_002909_050--Hb_010710_080 Hb_002909_050--Hb_000544_010 Hb_001599_030 Hb_001599_030 Hb_002909_050--Hb_001599_030 Hb_006915_070 Hb_006915_070 Hb_002909_050--Hb_006915_070 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_004994_380--Hb_001141_020 Hb_004994_380--Hb_004963_030 Hb_004963_030--Hb_010710_070 Hb_001442_040 Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_004963_030--Hb_188063_020 Hb_004963_030--Hb_001014_160 Hb_028912_050 Hb_028912_050 Hb_004963_030--Hb_028912_050 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250 Hb_009467_060 Hb_009467_060 Hb_001141_020--Hb_009467_060 Hb_001141_020--Hb_188063_020 Hb_003025_110 Hb_003025_110 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_009548_020 Hb_009548_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.5522 22.63 41.1299 27.9921 60.7984 60.5243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.141 27.9134 36.1215 32.2597 60.5132

CAGE analysis