Hb_000107_400

Information

Type -
Description -
Location Contig107: 279239-280451
Sequence    

Annotation

kegg
ID rcu:RCOM_1565840
description hypothetical protein
nr
ID XP_012075383.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
swissprot
ID Q9STF9
description Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1
trembl
ID A0A067LQZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10756 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02181: 279158-279278 , PASA_asmbl_02182: 279362-279541 , PASA_asmbl_02183: 280362-281030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_400 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
2 Hb_002749_110 0.0639138781 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
3 Hb_008695_020 0.0747082231 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
4 Hb_116349_030 0.0750817949 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
5 Hb_000574_440 0.0753990597 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
6 Hb_000849_020 0.0773809177 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
7 Hb_003018_130 0.0774338213 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_000665_160 0.0774380868 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
9 Hb_000544_010 0.0816865491 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
10 Hb_001599_030 0.0824817601 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
11 Hb_000855_020 0.0826529611 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
12 Hb_007765_080 0.0843552632 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
13 Hb_000003_290 0.085519198 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
14 Hb_030312_080 0.0867231099 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
15 Hb_007007_060 0.0876688499 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
16 Hb_000429_220 0.088642386 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
17 Hb_005993_050 0.0897097476 - - Protein AFR, putative [Ricinus communis]
18 Hb_001235_200 0.0911790412 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000320_200 0.0912329078 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
20 Hb_000714_050 0.0913534141 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]

Gene co-expression network

sample Hb_000107_400 Hb_000107_400 Hb_002749_110 Hb_002749_110 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_007007_060 Hb_007007_060 Hb_008695_020--Hb_007007_060 Hb_009646_030 Hb_009646_030 Hb_008695_020--Hb_009646_030 Hb_005993_050 Hb_005993_050 Hb_008695_020--Hb_005993_050 Hb_007904_120 Hb_007904_120 Hb_008695_020--Hb_007904_120 Hb_004055_150 Hb_004055_150 Hb_008695_020--Hb_004055_150 Hb_007765_080 Hb_007765_080 Hb_116349_030--Hb_007765_080 Hb_116349_030--Hb_000574_440 Hb_000855_020 Hb_000855_020 Hb_116349_030--Hb_000855_020 Hb_116349_030--Hb_008695_020 Hb_000003_290 Hb_000003_290 Hb_116349_030--Hb_000003_290 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_010812_050 Hb_010812_050 Hb_000849_020--Hb_010812_050 Hb_003884_030 Hb_003884_030 Hb_000849_020--Hb_003884_030 Hb_000849_020--Hb_002749_110 Hb_001898_090 Hb_001898_090 Hb_000849_020--Hb_001898_090 Hb_001021_220 Hb_001021_220 Hb_000849_020--Hb_001021_220 Hb_002823_030 Hb_002823_030 Hb_003018_130--Hb_002823_030 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_003018_130--Hb_000574_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.52586 5.23249 4.31108 3.86488 9.65513 6.90714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27744 3.182 3.90345 3.02456 6.45725

CAGE analysis