Hb_000849_020

Information

Type -
Description -
Location Contig849: 30140-35483
Sequence    

Annotation

kegg
ID rcu:RCOM_1626850
description hypothetical protein
nr
ID XP_012084899.1
description PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15113 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105644228 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60276: 30117-30322 , PASA_asmbl_60278: 33190-35458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_020 0.0 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
2 Hb_000107_400 0.0773809177 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
3 Hb_010812_050 0.0797983979 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
4 Hb_003884_030 0.0832187581 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
5 Hb_002749_110 0.0834522718 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
6 Hb_001898_090 0.0885018893 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
7 Hb_001021_220 0.0936858812 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
8 Hb_000963_130 0.0945119698 - - RNA m5u methyltransferase, putative [Ricinus communis]
9 Hb_028872_120 0.0954918116 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
10 Hb_000922_020 0.0955869592 - - protein binding protein, putative [Ricinus communis]
11 Hb_025557_050 0.0968679512 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
12 Hb_000574_440 0.0972086694 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
13 Hb_000856_420 0.0977227616 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_030312_080 0.0986129948 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
15 Hb_001377_110 0.0987752905 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
16 Hb_008887_020 0.0988072295 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
17 Hb_027380_140 0.0991854243 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_116349_030 0.0995423278 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
19 Hb_000544_010 0.099772634 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
20 Hb_007904_120 0.0999496173 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000849_020 Hb_000849_020 Hb_000107_400 Hb_000107_400 Hb_000849_020--Hb_000107_400 Hb_010812_050 Hb_010812_050 Hb_000849_020--Hb_010812_050 Hb_003884_030 Hb_003884_030 Hb_000849_020--Hb_003884_030 Hb_002749_110 Hb_002749_110 Hb_000849_020--Hb_002749_110 Hb_001898_090 Hb_001898_090 Hb_000849_020--Hb_001898_090 Hb_001021_220 Hb_001021_220 Hb_000849_020--Hb_001021_220 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_027380_140 Hb_027380_140 Hb_003884_030--Hb_027380_140 Hb_000035_410 Hb_000035_410 Hb_003884_030--Hb_000035_410 Hb_089140_050 Hb_089140_050 Hb_003884_030--Hb_089140_050 Hb_004108_100 Hb_004108_100 Hb_003884_030--Hb_004108_100 Hb_003656_180 Hb_003656_180 Hb_003884_030--Hb_003656_180 Hb_000429_220 Hb_000429_220 Hb_003884_030--Hb_000429_220 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_000010_180 Hb_000010_180 Hb_001898_090--Hb_000010_180 Hb_000010_390 Hb_000010_390 Hb_001898_090--Hb_000010_390 Hb_001898_090--Hb_000107_400 Hb_012286_010 Hb_012286_010 Hb_001898_090--Hb_012286_010 Hb_001898_090--Hb_002749_110 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7081 13.0048 13.6176 6.96953 19.2049 17.679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.90441 4.87976 8.76197 7.70346 18.1699

CAGE analysis