Hb_002027_090

Information

Type -
Description -
Location Contig2027: 40463-41052
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20676: 39041-41071 , PASA_asmbl_20677: 39125-41071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_090 0.0 - - -
2 Hb_000358_140 0.0699665875 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010812_050 0.0938068148 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
4 Hb_005496_050 0.0968764912 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
5 Hb_041327_020 0.0969588818 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006816_180 0.0970859458 - - -
7 Hb_000627_250 0.0983373762 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
8 Hb_000015_100 0.0992507514 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_008206_060 0.0997682781 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001259_020 0.1077049647 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
11 Hb_000816_100 0.1088284767 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_025557_050 0.1090902332 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
13 Hb_001619_050 0.1126588932 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
14 Hb_000445_140 0.1131616465 - - hypothetical protein RCOM_0561550 [Ricinus communis]
15 Hb_000849_020 0.1137321978 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
16 Hb_000948_170 0.1162631999 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
17 Hb_001089_060 0.1193481541 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
18 Hb_000331_560 0.1225967614 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
19 Hb_000363_060 0.1227741202 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_003900_030 0.1228437095 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_090 Hb_002027_090 Hb_000358_140 Hb_000358_140 Hb_002027_090--Hb_000358_140 Hb_010812_050 Hb_010812_050 Hb_002027_090--Hb_010812_050 Hb_005496_050 Hb_005496_050 Hb_002027_090--Hb_005496_050 Hb_041327_020 Hb_041327_020 Hb_002027_090--Hb_041327_020 Hb_006816_180 Hb_006816_180 Hb_002027_090--Hb_006816_180 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250 Hb_005883_020 Hb_005883_020 Hb_000358_140--Hb_005883_020 Hb_000358_140--Hb_010812_050 Hb_000358_140--Hb_006816_180 Hb_000358_140--Hb_041327_020 Hb_002233_130 Hb_002233_130 Hb_000358_140--Hb_002233_130 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_001014_100 Hb_001014_100 Hb_005496_050--Hb_001014_100 Hb_005496_050--Hb_006816_180 Hb_005496_050--Hb_041327_020 Hb_000445_140 Hb_000445_140 Hb_005496_050--Hb_000445_140 Hb_001619_050 Hb_001619_050 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_098209_010 Hb_098209_010 Hb_041327_020--Hb_098209_010 Hb_132840_110 Hb_132840_110 Hb_041327_020--Hb_132840_110 Hb_041327_020--Hb_001619_050 Hb_000320_470 Hb_000320_470 Hb_041327_020--Hb_000320_470 Hb_041327_020--Hb_000445_140 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_006816_180--Hb_025557_050 Hb_000300_670 Hb_000300_670 Hb_006816_180--Hb_000300_670 Hb_000948_170 Hb_000948_170 Hb_000627_250--Hb_000948_170 Hb_031284_070 Hb_031284_070 Hb_000627_250--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000627_250--Hb_021346_030 Hb_000015_100 Hb_000015_100 Hb_000627_250--Hb_000015_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_000627_250--Hb_025557_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8673 10.4815 12.1294 8.05556 12.0126 13.0819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32422 4.65183 6.24306 3.36755 23.4623

CAGE analysis