Hb_000948_170

Information

Type -
Description -
Location Contig948: 177424-185237
Sequence    

Annotation

kegg
ID rcu:RCOM_0517130
description hypothetical protein
nr
ID KDP37295.1
description hypothetical protein JCGZ_06749 [Jatropha curcas]
swissprot
ID Q8GW20
description Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=2 SV=2
trembl
ID A0A067KYG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06749 PE=4 SV=1
Gene Ontology
ID GO:0009941
description iron-sulfur cluster biosynthesis family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63326: 177747-185208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_170 0.0 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
2 Hb_000015_100 0.0668396231 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_031284_070 0.0685447661 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
4 Hb_021346_030 0.0698219881 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
5 Hb_000627_250 0.0722004783 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
6 Hb_001205_300 0.0912107027 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
7 Hb_000816_100 0.0921214176 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000740_050 0.0957216503 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
9 Hb_004218_280 0.0982478831 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
10 Hb_003462_070 0.1003156041 - - arsenical pump-driving atpase, putative [Ricinus communis]
11 Hb_000080_120 0.1004752882 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
12 Hb_008206_060 0.1010946058 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_005470_020 0.1018112147 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
14 Hb_010812_050 0.1036889839 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
15 Hb_000084_280 0.1078026964 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
16 Hb_048141_020 0.1079223104 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
17 Hb_000076_130 0.109283733 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
18 Hb_025557_050 0.1096305316 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
19 Hb_023278_010 0.1120393007 - - Chaperone protein DnaJ [Glycine soja]
20 Hb_003440_060 0.1124068831 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000948_170 Hb_000948_170 Hb_000015_100 Hb_000015_100 Hb_000948_170--Hb_000015_100 Hb_031284_070 Hb_031284_070 Hb_000948_170--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000948_170--Hb_021346_030 Hb_000627_250 Hb_000627_250 Hb_000948_170--Hb_000627_250 Hb_001205_300 Hb_001205_300 Hb_000948_170--Hb_001205_300 Hb_000816_100 Hb_000816_100 Hb_000948_170--Hb_000816_100 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_000015_100--Hb_031284_070 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060 Hb_031284_070--Hb_000627_250 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_031284_070--Hb_001205_300 Hb_021346_030--Hb_000627_250 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_021346_030--Hb_000816_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_003462_070 Hb_003462_070 Hb_001205_300--Hb_003462_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5033 8.99201 20.5559 10.5457 18.0867 28.5771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9547 9.95943 8.59985 8.04684 33.1069

CAGE analysis