Hb_000740_050

Information

Type -
Description -
Location Contig740: 23128-32760
Sequence    

Annotation

kegg
ID rcu:RCOM_0343090
description lysyl-tRNA synthetase, putative (EC:6.1.1.6)
nr
ID XP_012080813.1
description PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
swissprot
ID P73443
description Lysine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lysS PE=3 SV=1
trembl
ID A0A067K6G3
description Lysine--tRNA ligase OS=Jatropha curcas GN=JCGZ_16183 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable lysine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56355: 22983-32654 , PASA_asmbl_56356: 22983-32507 , PASA_asmbl_56357: 22983-29725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_050 0.0 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
2 Hb_004218_280 0.059367651 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
3 Hb_003462_070 0.0753947149 - - arsenical pump-driving atpase, putative [Ricinus communis]
4 Hb_031284_070 0.0852988795 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
5 Hb_001205_300 0.08763927 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
6 Hb_000797_040 0.0881472634 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
7 Hb_003440_060 0.0884454977 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
8 Hb_000723_100 0.0942542861 - - phosphoglycerate kinase, putative [Ricinus communis]
9 Hb_000948_170 0.0957216503 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
10 Hb_008642_040 0.0960503644 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
11 Hb_003878_110 0.0980048116 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
12 Hb_004097_070 0.0981376089 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
13 Hb_004310_140 0.0984697162 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002304_060 0.0990212323 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
15 Hb_003438_050 0.0991647047 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
16 Hb_000346_060 0.1015112676 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
17 Hb_005405_020 0.1022127179 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
18 Hb_000627_250 0.1022880446 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
19 Hb_025557_050 0.1033962987 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
20 Hb_009225_020 0.103605684 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]

Gene co-expression network

sample Hb_000740_050 Hb_000740_050 Hb_004218_280 Hb_004218_280 Hb_000740_050--Hb_004218_280 Hb_003462_070 Hb_003462_070 Hb_000740_050--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_000740_050--Hb_031284_070 Hb_001205_300 Hb_001205_300 Hb_000740_050--Hb_001205_300 Hb_000797_040 Hb_000797_040 Hb_000740_050--Hb_000797_040 Hb_003440_060 Hb_003440_060 Hb_000740_050--Hb_003440_060 Hb_007441_130 Hb_007441_130 Hb_004218_280--Hb_007441_130 Hb_004218_280--Hb_003462_070 Hb_000076_130 Hb_000076_130 Hb_004218_280--Hb_000076_130 Hb_007919_100 Hb_007919_100 Hb_004218_280--Hb_007919_100 Hb_003438_050 Hb_003438_050 Hb_004218_280--Hb_003438_050 Hb_003462_070--Hb_001205_300 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_009225_020 Hb_009225_020 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_000948_170 Hb_000948_170 Hb_031284_070--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_031284_070--Hb_000627_250 Hb_021346_030 Hb_021346_030 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_031284_070--Hb_001205_300 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_001205_300--Hb_009225_020 Hb_001205_300--Hb_000948_170 Hb_000665_120 Hb_000665_120 Hb_000797_040--Hb_000665_120 Hb_002205_030 Hb_002205_030 Hb_000797_040--Hb_002205_030 Hb_028960_020 Hb_028960_020 Hb_000797_040--Hb_028960_020 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8562 7.1195 13.4124 8.23329 10.0424 16.8493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3862 7.05371 5.0038 8.05326 16.3024

CAGE analysis