Hb_001205_300

Information

Type -
Description -
Location Contig1205: 231676-237139
Sequence    

Annotation

kegg
ID rcu:RCOM_0281090
description glutamyl-tRNA synthetase 1, 2, putative (EC:6.1.1.17)
nr
ID XP_002532486.1
description glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
swissprot
ID Q9FEA2
description Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At5g64050 PE=2 SV=1
trembl
ID B9T2L7
description Glutamyl-tRNA synthetase 1, 2, putative OS=Ricinus communis GN=RCOM_0281090 PE=3 SV=1
Gene Ontology
ID GO:0009570
description glutamate--trna chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06358: 231699-237169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_300 0.0 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
2 Hb_003462_070 0.0639538618 - - arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_031284_070 0.0864331724 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
4 Hb_000046_330 0.0868595779 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
5 Hb_000740_050 0.08763927 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
6 Hb_009225_020 0.0876609167 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
7 Hb_000948_170 0.0912107027 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
8 Hb_029695_110 0.0915571399 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
9 Hb_069662_010 0.0929657062 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
10 Hb_000920_030 0.0935228168 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_003440_060 0.0996150988 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
12 Hb_000061_020 0.1000422263 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
13 Hb_021346_030 0.1010636532 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
14 Hb_004218_280 0.1025370361 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
15 Hb_000221_140 0.1030082503 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_005405_020 0.103251894 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
17 Hb_002184_150 0.1057870616 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_000062_370 0.1059566222 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
19 Hb_001660_120 0.1062482045 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
20 Hb_001604_120 0.1063108321 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_300 Hb_001205_300 Hb_003462_070 Hb_003462_070 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_003462_070--Hb_000740_050 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_031284_070--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_031284_070--Hb_000627_250 Hb_021346_030 Hb_021346_030 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_031284_070--Hb_000740_050 Hb_028960_020 Hb_028960_020 Hb_000046_330--Hb_028960_020 Hb_000212_440 Hb_000212_440 Hb_000046_330--Hb_000212_440 Hb_041290_020 Hb_041290_020 Hb_000046_330--Hb_041290_020 Hb_001040_100 Hb_001040_100 Hb_000046_330--Hb_001040_100 Hb_000010_140 Hb_000010_140 Hb_000046_330--Hb_000010_140 Hb_004218_280 Hb_004218_280 Hb_000740_050--Hb_004218_280 Hb_000797_040 Hb_000797_040 Hb_000740_050--Hb_000797_040 Hb_003440_060 Hb_003440_060 Hb_000740_050--Hb_003440_060 Hb_003728_100 Hb_003728_100 Hb_009225_020--Hb_003728_100 Hb_000207_300 Hb_000207_300 Hb_009225_020--Hb_000207_300 Hb_005405_020 Hb_005405_020 Hb_009225_020--Hb_005405_020 Hb_000221_140 Hb_000221_140 Hb_009225_020--Hb_000221_140 Hb_000015_100 Hb_000015_100 Hb_000948_170--Hb_000015_100 Hb_000948_170--Hb_021346_030 Hb_000948_170--Hb_000627_250 Hb_000816_100 Hb_000816_100 Hb_000948_170--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4458 11.4346 48.5107 25.0616 30.7697 43.2338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.039 18.1845 15.1288 19.5775 53.1986

CAGE analysis