Hb_000920_030

Information

Type -
Description -
Location Contig920: 22161-30979
Sequence    

Annotation

kegg
ID rcu:RCOM_0472100
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002527336.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9C826
description Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1
trembl
ID B9SMW7
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0472100 PE=4 SV=1
Gene Ontology
ID GO:0004022
description short chain alcohol

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62379: 6460-24379 , PASA_asmbl_62380: 6626-22858 , PASA_asmbl_62382: 27338-28336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_030 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_003462_070 0.0753338071 - - arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_029695_110 0.086261163 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
4 Hb_001205_300 0.0935228168 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
5 Hb_006538_120 0.0951601454 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
6 Hb_003728_100 0.1001655285 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
7 Hb_000441_060 0.1023635705 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
8 Hb_001660_120 0.1033124571 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
9 Hb_003752_070 0.1037520086 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
10 Hb_031284_070 0.1058242786 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
11 Hb_000061_020 0.1063799165 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
12 Hb_069662_010 0.1064443415 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
13 Hb_021346_030 0.1127872888 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
14 Hb_009225_020 0.1128538408 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
15 Hb_000948_170 0.1141894865 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
16 Hb_001348_190 0.114425962 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
17 Hb_000221_140 0.1150263849 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_000300_670 0.1150920444 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
19 Hb_000608_380 0.1166466232 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000029_110 0.1176869709 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000920_030 Hb_000920_030 Hb_003462_070 Hb_003462_070 Hb_000920_030--Hb_003462_070 Hb_029695_110 Hb_029695_110 Hb_000920_030--Hb_029695_110 Hb_001205_300 Hb_001205_300 Hb_000920_030--Hb_001205_300 Hb_006538_120 Hb_006538_120 Hb_000920_030--Hb_006538_120 Hb_003728_100 Hb_003728_100 Hb_000920_030--Hb_003728_100 Hb_000441_060 Hb_000441_060 Hb_000920_030--Hb_000441_060 Hb_003462_070--Hb_001205_300 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000740_050 Hb_000740_050 Hb_003462_070--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_029695_110--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_029695_110--Hb_000959_030 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_001205_300--Hb_000740_050 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_003728_100--Hb_000221_140 Hb_003728_100--Hb_003462_070 Hb_001022_030 Hb_001022_030 Hb_003728_100--Hb_001022_030 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020 Hb_000608_380 Hb_000608_380 Hb_000441_060--Hb_000608_380 Hb_069662_010 Hb_069662_010 Hb_000441_060--Hb_069662_010 Hb_003752_070 Hb_003752_070 Hb_000441_060--Hb_003752_070 Hb_000441_060--Hb_006538_120 Hb_000029_110 Hb_000029_110 Hb_000441_060--Hb_000029_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.90932 2.52285 9.00965 5.91941 5.62478 5.97551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01518 3.87766 2.44397 2.13033 12.2743

CAGE analysis