Hb_009775_010

Information

Type -
Description -
Location Contig9775: 7232-14947
Sequence    

Annotation

kegg
ID rcu:RCOM_0574970
description hypothetical protein
nr
ID XP_012071565.1
description PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04072 PE=4 SV=1
Gene Ontology
ID GO:0016020
description PREDICTED: uncharacterized protein LOC105633555

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64209: 7285-8373 , PASA_asmbl_64210: 7393-9245 , PASA_asmbl_64211: 10976-14925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009775_010 0.0 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
2 Hb_006538_120 0.0689110469 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
3 Hb_000221_140 0.077574298 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_000580_150 0.0801561306 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
5 Hb_000173_250 0.0820030153 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
6 Hb_001410_070 0.0890844648 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
7 Hb_001660_120 0.0928966165 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
8 Hb_001935_100 0.0930529976 - - structural molecule, putative [Ricinus communis]
9 Hb_001438_010 0.093952196 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
10 Hb_000941_100 0.0942748171 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
11 Hb_005127_030 0.094669156 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000462_090 0.0949606487 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
13 Hb_005539_010 0.0981925774 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
14 Hb_012150_030 0.101057024 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_033312_010 0.1013926999 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_019053_060 0.1019011245 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
17 Hb_011861_050 0.1054753124 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
18 Hb_001946_160 0.1065663277 - - putative chaperon P13.9 [Castanea sativa]
19 Hb_002217_260 0.106682811 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
20 Hb_000144_060 0.1073774003 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009775_010 Hb_009775_010 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_009775_010--Hb_000221_140 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_000173_250 Hb_000173_250 Hb_009775_010--Hb_000173_250 Hb_001410_070 Hb_001410_070 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_006538_120--Hb_000221_140 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_000221_140--Hb_001660_120 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_000311_120 Hb_000311_120 Hb_000580_150--Hb_000311_120 Hb_001438_010 Hb_001438_010 Hb_000580_150--Hb_001438_010 Hb_000580_150--Hb_000221_140 Hb_010174_090 Hb_010174_090 Hb_000580_150--Hb_010174_090 Hb_001935_100 Hb_001935_100 Hb_000580_150--Hb_001935_100 Hb_019053_060 Hb_019053_060 Hb_000173_250--Hb_019053_060 Hb_000462_090 Hb_000462_090 Hb_000173_250--Hb_000462_090 Hb_011689_120 Hb_011689_120 Hb_000173_250--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_000173_250--Hb_000487_260 Hb_006846_150 Hb_006846_150 Hb_000173_250--Hb_006846_150 Hb_001410_070--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001410_070--Hb_000796_160 Hb_000025_780 Hb_000025_780 Hb_001410_070--Hb_000025_780 Hb_001410_070--Hb_005539_010 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4259 6.9635 19.2979 8.1429 7.02939 10.0835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1655 13.131 8.28511 7.07428 29.8449

CAGE analysis