Hb_000487_260

Information

Type -
Description -
Location Contig487: 240093-242921
Sequence    

Annotation

kegg
ID pop:POPTR_0011s14610g
description POPTRDRAFT_727196; hypothetical protein
nr
ID XP_012087406.1
description PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
swissprot
ID Q9LDY9
description Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2 SV=1
trembl
ID A0A067JYP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22650 PE=3 SV=1
Gene Ontology
ID GO:0008654
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45024: 240070-242935
cDNA
(Sanger)
(ID:Location)		 007_G17.ab1: 240193-242554 , 011_M14.ab1: 240197-242505 , 013_H16r.ab1: 239414-239947 , 019_A08.ab1: 240174-242561 , 020_I09.ab1: 240198-242465 , 027_B05.ab1: 240174-242213

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_260 0.0 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
2 Hb_000811_070 0.0634211247 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
3 Hb_006846_150 0.0737641442 - - conserved hypothetical protein [Ricinus communis]
4 Hb_019053_060 0.0797596552 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
5 Hb_000796_160 0.0876368884 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
6 Hb_001935_100 0.0896685498 - - structural molecule, putative [Ricinus communis]
7 Hb_008421_020 0.0909357912 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
8 Hb_007975_060 0.0930074455 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
9 Hb_007002_020 0.0933822849 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
10 Hb_001322_110 0.0957323468 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001277_100 0.0957645269 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
12 Hb_001287_040 0.0961911352 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
13 Hb_000173_250 0.098834226 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
14 Hb_000227_170 0.0989649248 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_001195_460 0.0990929009 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
16 Hb_011689_120 0.1000924531 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
17 Hb_029866_120 0.1002416278 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
18 Hb_005539_010 0.1012667856 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
19 Hb_003077_020 0.101784044 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001900_140 0.1020677531 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000487_260 Hb_000487_260 Hb_000811_070 Hb_000811_070 Hb_000487_260--Hb_000811_070 Hb_006846_150 Hb_006846_150 Hb_000487_260--Hb_006846_150 Hb_019053_060 Hb_019053_060 Hb_000487_260--Hb_019053_060 Hb_000796_160 Hb_000796_160 Hb_000487_260--Hb_000796_160 Hb_001935_100 Hb_001935_100 Hb_000487_260--Hb_001935_100 Hb_008421_020 Hb_008421_020 Hb_000487_260--Hb_008421_020 Hb_000811_070--Hb_006846_150 Hb_000811_070--Hb_008421_020 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_011689_120 Hb_011689_120 Hb_006846_150--Hb_011689_120 Hb_000403_070 Hb_000403_070 Hb_006846_150--Hb_000403_070 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_009252_060 Hb_009252_060 Hb_019053_060--Hb_009252_060 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_001946_160 Hb_001946_160 Hb_019053_060--Hb_001946_160 Hb_000025_780 Hb_000025_780 Hb_000796_160--Hb_000025_780 Hb_000796_160--Hb_001935_100 Hb_000796_160--Hb_001410_070 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001935_100--Hb_001410_070 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_005016_040 Hb_005016_040 Hb_008421_020--Hb_005016_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.019 16.1528 43.3646 26.488 18.3702 17.3848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1336 42.4095 25.2814 11.0597 50.5792

CAGE analysis