Hb_006846_150

Information

Type -
Description -
Location Contig6846: 118218-122661
Sequence    

Annotation

kegg
ID rcu:RCOM_1503200
description hypothetical protein
nr
ID XP_002511077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FI46
description Chromophore lyase CRL, chloroplastic OS=Arabidopsis thaliana GN=CRL PE=1 SV=1
trembl
ID B9RA52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1503200 PE=3 SV=1
Gene Ontology
ID GO:0009707
description chromophore lyase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54077: 117221-117498 , PASA_asmbl_54078: 118367-119223 , PASA_asmbl_54079: 120007-120184 , PASA_asmbl_54080: 122145-122643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000811_070 0.0461482365 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
3 Hb_011689_120 0.0658990976 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
4 Hb_000403_070 0.0736684489 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000487_260 0.0737641442 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
6 Hb_004951_060 0.0806581002 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
7 Hb_012799_170 0.0818817822 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
8 Hb_007192_030 0.0845680642 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
9 Hb_062226_060 0.0870346439 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
10 Hb_008421_020 0.0883527494 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
11 Hb_001541_120 0.0901376039 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
12 Hb_001322_110 0.0906208695 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005167_010 0.092599515 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
14 Hb_000317_260 0.0929274232 - - unknown [Populus trichocarpa]
15 Hb_007904_230 0.093075469 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
16 Hb_001766_050 0.094377718 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
17 Hb_000394_180 0.0951224887 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
18 Hb_140627_010 0.0968920076 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000172_580 0.09867556 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001277_100 0.0995978936 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_006846_150 Hb_006846_150 Hb_000811_070 Hb_000811_070 Hb_006846_150--Hb_000811_070 Hb_011689_120 Hb_011689_120 Hb_006846_150--Hb_011689_120 Hb_000403_070 Hb_000403_070 Hb_006846_150--Hb_000403_070 Hb_000487_260 Hb_000487_260 Hb_006846_150--Hb_000487_260 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_011689_120--Hb_000811_070 Hb_001318_260 Hb_001318_260 Hb_011689_120--Hb_001318_260 Hb_140627_010 Hb_140627_010 Hb_000403_070--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290 Hb_019053_060 Hb_019053_060 Hb_000487_260--Hb_019053_060 Hb_000796_160 Hb_000796_160 Hb_000487_260--Hb_000796_160 Hb_001935_100 Hb_001935_100 Hb_000487_260--Hb_001935_100 Hb_000487_260--Hb_008421_020 Hb_062226_060 Hb_062226_060 Hb_004951_060--Hb_062226_060 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_001662_130 Hb_001662_130 Hb_004951_060--Hb_001662_130 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004951_060--Hb_000317_260 Hb_012799_170--Hb_005167_010 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_012799_170--Hb_001322_110 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.79717 5.30702 13.6874 11.1635 5.9047 5.33686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0474 18.0895 11.6187 7.22783 21.0082

CAGE analysis