Hb_001662_130

Information

Type -
Description -
Location Contig1662: 135629-138715
Sequence    

Annotation

kegg
ID rcu:RCOM_0783240
description hypothetical protein
nr
ID XP_012065324.1
description PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FWS6
description Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
trembl
ID A0A067L5Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22334 PE=4 SV=1
Gene Ontology
ID GO:0004518
description bifunctional nuclease 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15336: 135343-138695 , PASA_asmbl_15337: 137087-138695 , PASA_asmbl_15338: 136400-136728 , PASA_asmbl_15339: 139365-142783
cDNA
(Sanger)
(ID:Location)		 018_I09.ab1: 137271-138695

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_130 0.0 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
2 Hb_004951_060 0.0709683782 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
3 Hb_000080_130 0.0724684413 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
4 Hb_000590_120 0.0746561931 - - dehydroascorbate reductase, putative [Ricinus communis]
5 Hb_015675_040 0.0786583381 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
6 Hb_001766_050 0.0823702194 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
7 Hb_005653_070 0.0824984684 - - K+ transport growth defect-like protein [Hevea brasiliensis]
8 Hb_158530_020 0.0834095575 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_062226_060 0.0851847579 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
10 Hb_004157_050 0.0869860672 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
11 Hb_000483_300 0.0873315002 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
12 Hb_002392_010 0.0878975029 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
13 Hb_004545_110 0.0890929089 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
14 Hb_180343_010 0.0891278604 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
15 Hb_133702_010 0.0895152052 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000603_160 0.0896874859 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
17 Hb_005167_010 0.0899993917 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
18 Hb_003878_090 0.0909201881 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
19 Hb_001541_120 0.0910438589 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_001269_190 0.0931483053 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001662_130 Hb_001662_130 Hb_004951_060 Hb_004951_060 Hb_001662_130--Hb_004951_060 Hb_000080_130 Hb_000080_130 Hb_001662_130--Hb_000080_130 Hb_000590_120 Hb_000590_120 Hb_001662_130--Hb_000590_120 Hb_015675_040 Hb_015675_040 Hb_001662_130--Hb_015675_040 Hb_001766_050 Hb_001766_050 Hb_001662_130--Hb_001766_050 Hb_005653_070 Hb_005653_070 Hb_001662_130--Hb_005653_070 Hb_062226_060 Hb_062226_060 Hb_004951_060--Hb_062226_060 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004951_060--Hb_000317_260 Hb_006846_150 Hb_006846_150 Hb_004951_060--Hb_006846_150 Hb_004545_110 Hb_004545_110 Hb_000080_130--Hb_004545_110 Hb_000080_130--Hb_015675_040 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_005167_010 Hb_005167_010 Hb_000080_130--Hb_005167_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_000240_030 Hb_000240_030 Hb_000590_120--Hb_000240_030 Hb_066842_010 Hb_066842_010 Hb_000590_120--Hb_066842_010 Hb_001269_190 Hb_001269_190 Hb_000590_120--Hb_001269_190 Hb_002110_100 Hb_002110_100 Hb_000590_120--Hb_002110_100 Hb_000590_120--Hb_004951_060 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000840_200 Hb_000840_200 Hb_015675_040--Hb_000840_200 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220 Hb_001541_120 Hb_001541_120 Hb_001766_050--Hb_001541_120 Hb_008421_020 Hb_008421_020 Hb_001766_050--Hb_008421_020 Hb_000928_070 Hb_000928_070 Hb_001766_050--Hb_000928_070 Hb_000130_220 Hb_000130_220 Hb_001766_050--Hb_000130_220 Hb_001766_050--Hb_062226_060 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_189216_010 Hb_189216_010 Hb_005653_070--Hb_189216_010 Hb_001728_040 Hb_001728_040 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9375 6.47056 11.029 14.6394 3.5186 6.29537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9802 11.0211 9.62671 7.57588 13.0235

CAGE analysis