Hb_001728_040

Information

Type -
Description -
Location Contig1728: 27345-27881
Sequence    

Annotation

kegg
ID tcc:TCM_007626
description Aconitase/3-isopropylmalate dehydratase protein
nr
ID XP_007043146.1
description Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
swissprot
ID Q9ZW85
description 3-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana GN=At2g43090 PE=1 SV=1
trembl
ID A0A061E2V8
description Aconitase/3-isopropylmalate dehydratase protein OS=Theobroma cacao GN=TCM_007626 PE=4 SV=1
Gene Ontology
ID GO:0016836
description 3-isopropylmalate dehydratase small subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16386: 27086-38594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_040 0.0 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
2 Hb_002303_020 0.0679018082 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
3 Hb_000847_060 0.0694365395 - - hypothetical protein [Jatropha curcas]
4 Hb_005653_070 0.0758790521 - - K+ transport growth defect-like protein [Hevea brasiliensis]
5 Hb_000723_230 0.0838616518 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
6 Hb_015057_020 0.0845783015 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
7 Hb_003376_180 0.0870849293 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
8 Hb_002272_270 0.0891800869 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
9 Hb_006637_030 0.089432167 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
10 Hb_000365_270 0.0898234395 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
11 Hb_002045_070 0.0901586695 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
12 Hb_000840_200 0.0905972311 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
13 Hb_004108_220 0.0907818768 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
14 Hb_002477_290 0.0916176408 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
15 Hb_006538_090 0.093738886 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_000367_090 0.0937422394 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
17 Hb_000521_240 0.0944129879 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
18 Hb_007218_120 0.0944338982 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
19 Hb_000069_720 0.0945774328 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
20 Hb_044653_040 0.0948903006 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_040 Hb_001728_040 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_000847_060 Hb_000847_060 Hb_001728_040--Hb_000847_060 Hb_005653_070 Hb_005653_070 Hb_001728_040--Hb_005653_070 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_000840_200 Hb_000840_200 Hb_002303_020--Hb_000840_200 Hb_002534_100 Hb_002534_100 Hb_002303_020--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_002303_020--Hb_004712_210 Hb_044653_040 Hb_044653_040 Hb_002303_020--Hb_044653_040 Hb_015675_040 Hb_015675_040 Hb_002303_020--Hb_015675_040 Hb_000155_160 Hb_000155_160 Hb_000847_060--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000847_060--Hb_002239_050 Hb_000419_020 Hb_000419_020 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000161_130 Hb_000161_130 Hb_000847_060--Hb_000161_130 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_189216_010 Hb_189216_010 Hb_005653_070--Hb_189216_010 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640 Hb_006637_030 Hb_006637_030 Hb_000723_230--Hb_006637_030 Hb_000723_230--Hb_005653_070 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_032920_070 Hb_032920_070 Hb_015057_020--Hb_032920_070 Hb_000210_060 Hb_000210_060 Hb_015057_020--Hb_000210_060 Hb_002477_290 Hb_002477_290 Hb_015057_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_015057_020--Hb_005276_040 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090 Hb_003376_180--Hb_007218_120 Hb_000110_140 Hb_000110_140 Hb_003376_180--Hb_000110_140 Hb_003376_180--Hb_002477_290 Hb_003376_180--Hb_005653_070 Hb_002660_170 Hb_002660_170 Hb_003376_180--Hb_002660_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.5359 86.5084 107.999 135.585 29.0928 54.6042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.7676 151.65 74.7651 107.492 102.046

CAGE analysis