Hb_000465_300

Information

Type -
Description -
Location Contig465: 266330-269847
Sequence    

Annotation

kegg
ID rcu:RCOM_0006390
description Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative (EC:3.1.3.16)
nr
ID XP_012070044.1
description PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
swissprot
ID Q9ZQP1
description Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2
trembl
ID A0A067KUT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03443 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase dsp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43990: 266449-269844 , PASA_asmbl_43991: 266449-269822 , PASA_asmbl_43992: 266449-269844
cDNA
(Sanger)
(ID:Location)		 024_D18.ab1: 266454-267160 , 029_F18.ab1: 266449-268153 , 050_B04.ab1: 266441-268149 , 050_K13.ab1: 266449-268162

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_300 0.0 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
2 Hb_000749_050 0.0645803821 - - mitochondrial thioredoxin [Hevea brasiliensis]
3 Hb_000173_470 0.0655991153 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
4 Hb_163256_020 0.0669268354 - - fructokinase [Manihot esculenta]
5 Hb_000723_230 0.0838949424 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
6 Hb_000890_150 0.0862315143 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
7 Hb_002045_070 0.0881251543 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
8 Hb_004324_090 0.088145221 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
9 Hb_022250_060 0.0937861908 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
10 Hb_001635_190 0.094030529 - - RNA m5u methyltransferase, putative [Ricinus communis]
11 Hb_003994_260 0.0948922251 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
12 Hb_007218_120 0.0950678342 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
13 Hb_033594_080 0.0974723481 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
14 Hb_000521_240 0.0984048989 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
15 Hb_011218_090 0.0986167098 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
16 Hb_000856_010 0.0987821315 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
17 Hb_023771_010 0.0999292101 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
18 Hb_002119_130 0.1009948024 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
19 Hb_000359_060 0.1011239423 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_000221_190 0.1015350041 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000465_300 Hb_000465_300 Hb_000749_050 Hb_000749_050 Hb_000465_300--Hb_000749_050 Hb_000173_470 Hb_000173_470 Hb_000465_300--Hb_000173_470 Hb_163256_020 Hb_163256_020 Hb_000465_300--Hb_163256_020 Hb_000723_230 Hb_000723_230 Hb_000465_300--Hb_000723_230 Hb_000890_150 Hb_000890_150 Hb_000465_300--Hb_000890_150 Hb_002045_070 Hb_002045_070 Hb_000465_300--Hb_002045_070 Hb_000749_050--Hb_002045_070 Hb_000749_050--Hb_000173_470 Hb_000749_050--Hb_000890_150 Hb_000215_320 Hb_000215_320 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000173_470--Hb_000890_150 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_006256_030 Hb_006256_030 Hb_163256_020--Hb_006256_030 Hb_158445_010 Hb_158445_010 Hb_163256_020--Hb_158445_010 Hb_022318_020 Hb_022318_020 Hb_163256_020--Hb_022318_020 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_006637_030 Hb_006637_030 Hb_000723_230--Hb_006637_030 Hb_005653_070 Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_000359_060 Hb_000359_060 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_002045_070--Hb_033594_080 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9965 81.8195 54.6461 75.8361 24.2566 28.7832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.2731 98.3229 81.4904 64.211 46.9099

CAGE analysis