Hb_006060_020

Information

Type transcription factor
Description TF Family: Tify
Location Contig6060: 50094-59677
Sequence    

Annotation

kegg
ID rcu:RCOM_0927570
description hypothetical protein
nr
ID XP_012078633.1
description PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
swissprot
ID Q84MB2
description Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE=1 SV=1
trembl
ID A0A067KBC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13218 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50769: 50293-59616 , PASA_asmbl_50770: 50293-59616 , PASA_asmbl_50771: 50147-59614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006060_020 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
2 Hb_000723_230 0.0918458546 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
3 Hb_006643_020 0.093074448 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
4 Hb_006637_030 0.1047579727 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
5 Hb_026198_010 0.1094046743 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
6 Hb_053709_050 0.1105950188 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000555_100 0.1134061947 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
8 Hb_000975_350 0.1153973625 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
9 Hb_000365_270 0.1167449224 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
10 Hb_001728_020 0.1170075591 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
11 Hb_001728_040 0.1171037273 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
12 Hb_005245_120 0.1173886373 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_189216_010 0.118090943 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
14 Hb_001221_110 0.1183806665 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
15 Hb_000029_190 0.1208779987 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
16 Hb_005588_060 0.1212246288 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
17 Hb_007257_060 0.1213690765 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
18 Hb_050847_050 0.1217513129 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
19 Hb_001357_310 0.1235229679 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
20 Hb_000749_050 0.1262452396 - - mitochondrial thioredoxin [Hevea brasiliensis]

Gene co-expression network

sample Hb_006060_020 Hb_006060_020 Hb_000723_230 Hb_000723_230 Hb_006060_020--Hb_000723_230 Hb_006643_020 Hb_006643_020 Hb_006060_020--Hb_006643_020 Hb_006637_030 Hb_006637_030 Hb_006060_020--Hb_006637_030 Hb_026198_010 Hb_026198_010 Hb_006060_020--Hb_026198_010 Hb_053709_050 Hb_053709_050 Hb_006060_020--Hb_053709_050 Hb_000555_100 Hb_000555_100 Hb_006060_020--Hb_000555_100 Hb_000723_230--Hb_006637_030 Hb_005653_070 Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_001396_110 Hb_001396_110 Hb_006643_020--Hb_001396_110 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_001911_040 Hb_001911_040 Hb_006643_020--Hb_001911_040 Hb_085972_010 Hb_085972_010 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_002693_030 Hb_002693_030 Hb_006637_030--Hb_002693_030 Hb_006637_030--Hb_053709_050 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_006637_030--Hb_005653_070 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_053709_050--Hb_002693_030 Hb_053709_050--Hb_189216_010 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_168893_020 Hb_168893_020 Hb_000555_100--Hb_168893_020 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_001369_250 Hb_001369_250 Hb_000555_100--Hb_001369_250 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_003058_120 Hb_003058_120 Hb_000555_100--Hb_003058_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1532 26.285 28.4828 31.0121 4.65592 12.2561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0967 26.2426 15.2376 25.7359 9.86668

CAGE analysis