Hb_000926_260

Information

Type -
Description -
Location Contig926: 272164-275350
Sequence    

Annotation

kegg
ID rcu:RCOM_0278070
description hypothetical protein
nr
ID XP_002530359.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8RWE8
description GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1
trembl
ID B9SWJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0278070 PE=4 SV=1
Gene Ontology
ID GO:0080048
description gdp-l-galactose phosphorylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62690: 271995-272253 , PASA_asmbl_62691: 272286-275285
cDNA
(Sanger)
(ID:Location)		 006_G03.ab1: 272342-273192 , 035_L20.ab1: 272342-273171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_026198_010 0.0772895574 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
3 Hb_001328_080 0.080752484 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
4 Hb_060094_010 0.0826611097 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
5 Hb_006468_010 0.086676062 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
6 Hb_003636_080 0.0939997674 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
7 Hb_089140_040 0.0958606309 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
8 Hb_000890_160 0.0962043861 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
9 Hb_003428_090 0.0969083185 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
10 Hb_002915_060 0.0982941684 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
11 Hb_115137_010 0.0994821432 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
12 Hb_016461_020 0.100695492 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000029_190 0.1018422917 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
14 Hb_000173_190 0.1033176287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000960_080 0.1063606676 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
16 Hb_001140_090 0.1071922761 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007904_300 0.1073988005 - - copine, putative [Ricinus communis]
18 Hb_006006_040 0.1074850562 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
19 Hb_001408_110 0.1078910141 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
20 Hb_007839_020 0.1090022865 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000926_260 Hb_000926_260 Hb_026198_010 Hb_026198_010 Hb_000926_260--Hb_026198_010 Hb_001328_080 Hb_001328_080 Hb_000926_260--Hb_001328_080 Hb_060094_010 Hb_060094_010 Hb_000926_260--Hb_060094_010 Hb_006468_010 Hb_006468_010 Hb_000926_260--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_000926_260--Hb_003636_080 Hb_089140_040 Hb_089140_040 Hb_000926_260--Hb_089140_040 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_007839_020 Hb_007839_020 Hb_001328_080--Hb_007839_020 Hb_001329_200 Hb_001329_200 Hb_001328_080--Hb_001329_200 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_002965_050 Hb_002965_050 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070 Hb_000890_160 Hb_000890_160 Hb_006468_010--Hb_000890_160 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_006468_010--Hb_115137_010 Hb_006468_010--Hb_089140_040 Hb_001300_280 Hb_001300_280 Hb_003636_080--Hb_001300_280 Hb_011674_040 Hb_011674_040 Hb_003636_080--Hb_011674_040 Hb_000173_190 Hb_000173_190 Hb_003636_080--Hb_000173_190 Hb_000318_150 Hb_000318_150 Hb_003636_080--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_003636_080--Hb_000787_200 Hb_012092_050 Hb_012092_050 Hb_089140_040--Hb_012092_050 Hb_005489_140 Hb_005489_140 Hb_089140_040--Hb_005489_140 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_000008_420 Hb_000008_420 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.621 357.761 311.766 338.696 63.8829 128.349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.243 183.326 101.768 338.851 193.505

CAGE analysis