Hb_010068_070

Information

Type -
Description -
Location Contig10068: 45152-49241
Sequence    

Annotation

kegg
ID rcu:RCOM_0082230
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002532559.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q38868
description Calcium-dependent protein kinase 9 OS=Arabidopsis thaliana GN=CPK9 PE=1 SV=1
trembl
ID B9T2U0
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0082230 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00440: 45146-49486
cDNA
(Sanger)
(ID:Location)		 030_E14.ab1: 49044-49484 , 034_F20.ab1: 48759-49486

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_070 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_009372_020 0.0742850923 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
3 Hb_060094_010 0.0811121581 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
4 Hb_000890_160 0.0822470993 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
5 Hb_000156_090 0.0914746263 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
6 Hb_033363_010 0.0949552368 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
7 Hb_002965_050 0.0970753468 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
8 Hb_000421_110 0.0974050043 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
9 Hb_000866_140 0.0982145403 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
10 Hb_003428_090 0.0986928004 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
11 Hb_008725_050 0.0988675178 - - syntaxin, putative [Ricinus communis]
12 Hb_003018_030 0.1011127574 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
13 Hb_001195_350 0.1050420241 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
14 Hb_052135_020 0.1079648813 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
15 Hb_000270_700 0.1085331029 - - PREDICTED: protease Do-like 9 [Populus euphratica]
16 Hb_002387_040 0.1087838954 - - protein transporter, putative [Ricinus communis]
17 Hb_006468_010 0.1091168536 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
18 Hb_003964_110 0.1098185035 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
19 Hb_000956_040 0.1110794503 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
20 Hb_000926_260 0.1118660199 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010068_070 Hb_010068_070 Hb_009372_020 Hb_009372_020 Hb_010068_070--Hb_009372_020 Hb_060094_010 Hb_060094_010 Hb_010068_070--Hb_060094_010 Hb_000890_160 Hb_000890_160 Hb_010068_070--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_002965_050 Hb_002965_050 Hb_010068_070--Hb_002965_050 Hb_004375_110 Hb_004375_110 Hb_009372_020--Hb_004375_110 Hb_009372_020--Hb_060094_010 Hb_000111_370 Hb_000111_370 Hb_009372_020--Hb_000111_370 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_008725_050 Hb_008725_050 Hb_000890_160--Hb_008725_050 Hb_000890_160--Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_000890_160--Hb_003687_120 Hb_000866_140 Hb_000866_140 Hb_000890_160--Hb_000866_140 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_000156_090--Hb_003428_090 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_000072_020 Hb_000072_020 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_033363_010--Hb_000111_370 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8453 52.4277 45.9381 42.5332 8.37851 16.4399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.05 8.63169 13.1423 34.1259 19.3998

CAGE analysis