Hb_000890_160

Information

Type -
Description -
Location Contig890: 140602-146841
Sequence    

Annotation

kegg
ID rcu:RCOM_0680300
description anaphase promoting complex subunit, putative
nr
ID XP_012069387.1
description PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
swissprot
ID Q8VY89
description Anaphase-promoting complex subunit 7 OS=Arabidopsis thaliana GN=APC7 PE=2 SV=1
trembl
ID A0A067L7D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02007 PE=4 SV=1
Gene Ontology
ID GO:0000278
description anaphase-promoting complex subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61609: 140765-141118 , PASA_asmbl_61610: 141298-146810 , PASA_asmbl_61611: 145491-145826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_160 0.0 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
2 Hb_006468_010 0.0524876225 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
3 Hb_008725_050 0.0753017991 - - syntaxin, putative [Ricinus communis]
4 Hb_003428_090 0.0791519805 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
5 Hb_003687_120 0.0795019869 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
6 Hb_000866_140 0.081883875 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
7 Hb_010068_070 0.0822470993 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_000297_030 0.0827246165 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
9 Hb_003018_030 0.0833122733 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
10 Hb_060094_010 0.0853190902 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
11 Hb_000260_770 0.0897106328 - - er lumen protein retaining receptor, putative [Ricinus communis]
12 Hb_002304_050 0.0939016958 - - pyruvate kinase, putative [Ricinus communis]
13 Hb_016461_020 0.0940980896 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005833_030 0.0944718316 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
15 Hb_003636_080 0.0950631118 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
16 Hb_000926_260 0.0962043861 - - conserved hypothetical protein [Ricinus communis]
17 Hb_115137_010 0.0973007803 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
18 Hb_002687_180 0.0977668136 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
19 Hb_026198_010 0.0988359419 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
20 Hb_001221_580 0.1007509345 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_160 Hb_000890_160 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_008725_050 Hb_008725_050 Hb_000890_160--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_000890_160--Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_000890_160--Hb_003687_120 Hb_000866_140 Hb_000866_140 Hb_000890_160--Hb_000866_140 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_003636_080 Hb_003636_080 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_089140_040 Hb_089140_040 Hb_006468_010--Hb_089140_040 Hb_008725_050--Hb_003687_120 Hb_006452_180 Hb_006452_180 Hb_008725_050--Hb_006452_180 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_000156_090 Hb_000156_090 Hb_008725_050--Hb_000156_090 Hb_008725_050--Hb_003428_090 Hb_003428_090--Hb_003687_120 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_003428_090--Hb_000866_140 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000866_140--Hb_000156_090 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_009372_020 Hb_009372_020 Hb_010068_070--Hb_009372_020 Hb_010068_070--Hb_060094_010 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_002965_050 Hb_002965_050 Hb_010068_070--Hb_002965_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36819 9.16512 11.2966 9.03613 2.85429 3.16139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82941 3.04319 2.6792 7.9458 3.76708

CAGE analysis