Hb_003428_090

Information

Type -
Description -
Location Contig3428: 74988-81976
Sequence    

Annotation

kegg
ID rcu:RCOM_1063380
description hypothetical protein
nr
ID XP_012072470.1
description PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
swissprot
ID Q9M548
description DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1
trembl
ID A0A067LNJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10275 PE=4 SV=1
Gene Ontology
ID GO:0008168
description dna (cytosine-5)-methyltransferase drm1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35797: 76214-79556 , PASA_asmbl_35798: 78783-79196 , PASA_asmbl_35799: 80678-80957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_090 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
2 Hb_003687_120 0.0717798272 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
3 Hb_060094_010 0.0719709381 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
4 Hb_000866_140 0.0732100303 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
5 Hb_000156_090 0.075608902 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
6 Hb_002686_150 0.0766428635 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_000890_160 0.0791519805 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
8 Hb_008725_050 0.0797954184 - - syntaxin, putative [Ricinus communis]
9 Hb_002965_050 0.0829358617 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
10 Hb_003018_030 0.083153568 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
11 Hb_000034_110 0.0865436159 - - sentrin/sumo-specific protease, putative [Ricinus communis]
12 Hb_026198_010 0.0877244439 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
13 Hb_000956_040 0.0886307513 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
14 Hb_002107_100 0.0887778454 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
15 Hb_003725_010 0.0898104556 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
16 Hb_006452_180 0.0902334841 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
17 Hb_001729_020 0.0905401278 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_000680_120 0.0912016639 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
19 Hb_000173_190 0.0924526557 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000137_010 0.0933187184 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]

Gene co-expression network

sample Hb_003428_090 Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_000156_090 Hb_000156_090 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_002965_050 Hb_002965_050 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000866_140--Hb_000890_160 Hb_000866_140--Hb_000156_090 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_000156_090--Hb_002965_050 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_001729_020 Hb_001729_020 Hb_002686_150--Hb_001729_020 Hb_002686_150--Hb_000156_090 Hb_002686_150--Hb_002965_050 Hb_026198_010 Hb_026198_010 Hb_002686_150--Hb_026198_010 Hb_002686_150--Hb_060094_010 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_000890_160--Hb_008725_050 Hb_000890_160--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42156 17.3989 19.7723 14.029 4.61005 4.67126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33818 6.69027 4.32206 11.4444 9.31301

CAGE analysis