Hb_002686_150

Information

Type -
Description -
Location Contig2686: 92325-99053
Sequence    

Annotation

kegg
ID rcu:RCOM_1121830
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002525445.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q6NKW9
description Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2
trembl
ID B9SHH6
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1121830 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28003: 91834-92137 , PASA_asmbl_28004: 92189-92340 , PASA_asmbl_28005: 92546-99012 , PASA_asmbl_28006: 93400-93738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_150 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_001729_020 0.0734803328 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_003428_090 0.0766428635 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
4 Hb_000156_090 0.0836682007 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
5 Hb_002965_050 0.0912958685 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
6 Hb_026198_010 0.0927659292 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
7 Hb_060094_010 0.097877948 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
8 Hb_003687_120 0.0982101114 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
9 Hb_003018_030 0.1008301053 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
10 Hb_000711_010 0.1010915403 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
11 Hb_000890_160 0.1044773174 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
12 Hb_000009_520 0.1046966373 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
13 Hb_000680_120 0.1048437355 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
14 Hb_000137_010 0.1082120441 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
15 Hb_001140_090 0.1091125737 - - conserved hypothetical protein [Ricinus communis]
16 Hb_015778_040 0.1106954553 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
17 Hb_002900_120 0.1109595161 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
18 Hb_001376_010 0.1122273378 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
19 Hb_002203_030 0.112503751 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
20 Hb_000866_140 0.1130426347 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_150 Hb_002686_150 Hb_001729_020 Hb_001729_020 Hb_002686_150--Hb_001729_020 Hb_003428_090 Hb_003428_090 Hb_002686_150--Hb_003428_090 Hb_000156_090 Hb_000156_090 Hb_002686_150--Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_002686_150--Hb_002965_050 Hb_026198_010 Hb_026198_010 Hb_002686_150--Hb_026198_010 Hb_060094_010 Hb_060094_010 Hb_002686_150--Hb_060094_010 Hb_000979_140 Hb_000979_140 Hb_001729_020--Hb_000979_140 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_001729_020--Hb_003428_090 Hb_001729_020--Hb_002965_050 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_003428_090--Hb_060094_010 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_003428_090--Hb_000156_090 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_002965_050--Hb_000711_010 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.01412 20.262 24.9263 15.6064 2.7359 4.11405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.3155 6.75015 5.60517 11.5433 9.18976

CAGE analysis