Hb_000815_310

Information

Type -
Description -
Location Contig815: 311548-322611
Sequence    

Annotation

kegg
ID rcu:RCOM_0837790
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002522482.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9S913
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0837790 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase tnni3k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59375: 316936-317242 , PASA_asmbl_59376: 311514-317389 , PASA_asmbl_59377: 317991-322485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_310 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_003540_250 0.0651988555 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
3 Hb_003777_130 0.0678924871 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
4 Hb_033152_090 0.0682132551 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
5 Hb_002965_050 0.0709047003 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
6 Hb_007416_260 0.0779622757 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
7 Hb_002876_210 0.0847704443 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
8 Hb_000418_050 0.0860045092 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
9 Hb_000956_040 0.0860983581 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
10 Hb_000258_420 0.086234212 - - sucrose transporter 2A [Hevea brasiliensis]
11 Hb_003177_070 0.088757223 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
12 Hb_000787_080 0.0914470209 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
13 Hb_011930_100 0.0948377959 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
14 Hb_000137_010 0.0948682391 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
15 Hb_060094_010 0.0951846589 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
16 Hb_002248_120 0.0953231304 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_005305_100 0.0960800638 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_000197_180 0.0961854434 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
19 Hb_000979_140 0.0967495645 - - kinase family protein [Populus trichocarpa]
20 Hb_000640_190 0.0976462454 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000815_310 Hb_000815_310 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_003777_130 Hb_003777_130 Hb_000815_310--Hb_003777_130 Hb_033152_090 Hb_033152_090 Hb_000815_310--Hb_033152_090 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_005305_100 Hb_005305_100 Hb_003540_250--Hb_005305_100 Hb_003540_250--Hb_033152_090 Hb_000956_040 Hb_000956_040 Hb_003540_250--Hb_000956_040 Hb_000179_190 Hb_000179_190 Hb_003540_250--Hb_000179_190 Hb_002248_130 Hb_002248_130 Hb_003540_250--Hb_002248_130 Hb_000258_420 Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_003777_130--Hb_033152_090 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_000640_190 Hb_000640_190 Hb_003777_130--Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_033152_090--Hb_000956_040 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_007416_260--Hb_002965_050 Hb_000261_280 Hb_000261_280 Hb_007416_260--Hb_000261_280 Hb_000979_140 Hb_000979_140 Hb_007416_260--Hb_000979_140 Hb_000137_010 Hb_000137_010 Hb_007416_260--Hb_000137_010 Hb_007416_260--Hb_002876_210 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000711_010 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89703 19.4764 19.0492 16.3524 3.87737 5.34643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.87147 3.84582 4.12363 6.0994 12.4219

CAGE analysis