Hb_002217_090

Information

Type -
Description -
Location Contig2217: 120716-123529
Sequence    

Annotation

kegg
ID rcu:RCOM_1002460
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012084148.1
description PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
swissprot
ID Q9LNF4
description Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2
trembl
ID A0A067JVR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19057 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22891: 120724-123357 , PASA_asmbl_22893: 121162-123357
cDNA
(Sanger)
(ID:Location)		 008_N02.ab1: 120725-122351

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_090 0.0 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
2 Hb_001500_030 0.0751339543 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
3 Hb_004128_030 0.0791138615 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
4 Hb_000912_100 0.0832357797 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
5 Hb_003747_210 0.0871589681 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
6 Hb_000711_010 0.0902954606 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
7 Hb_002876_210 0.0915028089 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
8 Hb_000110_300 0.0924469475 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
9 Hb_000656_390 0.1015745666 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
10 Hb_010661_010 0.1018612552 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
11 Hb_023344_110 0.1026248982 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
12 Hb_000012_240 0.1063782978 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
13 Hb_000417_300 0.109281423 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
14 Hb_002900_120 0.1105095157 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
15 Hb_002774_200 0.1105139239 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
16 Hb_002046_060 0.1108292834 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
17 Hb_004837_150 0.1135822247 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
18 Hb_001944_020 0.1155310572 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
19 Hb_001699_230 0.1161568333 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
20 Hb_143766_030 0.1177425951 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002217_090 Hb_002217_090 Hb_001500_030 Hb_001500_030 Hb_002217_090--Hb_001500_030 Hb_004128_030 Hb_004128_030 Hb_002217_090--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_003747_210 Hb_003747_210 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002876_210 Hb_002876_210 Hb_002217_090--Hb_002876_210 Hb_010661_010 Hb_010661_010 Hb_001500_030--Hb_010661_010 Hb_001500_030--Hb_004128_030 Hb_001500_030--Hb_000912_100 Hb_001500_030--Hb_002876_210 Hb_001500_030--Hb_003747_210 Hb_004128_030--Hb_010661_010 Hb_002686_230 Hb_002686_230 Hb_004128_030--Hb_002686_230 Hb_010407_080 Hb_010407_080 Hb_004128_030--Hb_010407_080 Hb_004128_030--Hb_003747_210 Hb_001691_040 Hb_001691_040 Hb_000912_100--Hb_001691_040 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_003975_010 Hb_003975_010 Hb_000912_100--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_000912_100--Hb_002046_060 Hb_000912_100--Hb_002876_210 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_003747_210--Hb_010661_010 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_002965_050 Hb_002965_050 Hb_000711_010--Hb_002965_050 Hb_000711_010--Hb_002876_210 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_002900_120 Hb_002900_120 Hb_000711_010--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_000711_010--Hb_060094_010 Hb_002876_210--Hb_002965_050 Hb_002876_210--Hb_002900_120 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11552 26.5903 10.6429 20.5107 2.84429 3.88818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63354 7.9984 7.52799 8.48014 12.802

CAGE analysis