Hb_000417_300

Information

Type -
Description -
Location Contig417: 242874-246754
Sequence    

Annotation

kegg
ID eus:EUTSA_v10006783mg
description hypothetical protein
nr
ID XP_012091825.1
description PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
swissprot
ID Q9LMI0
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1
trembl
ID A0A067JMB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21606 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41269: 242500-242659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_300 0.0 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
2 Hb_000912_100 0.0873319245 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
3 Hb_000656_390 0.0987482961 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
4 Hb_002876_210 0.1008781083 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
5 Hb_004128_030 0.1010115186 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
6 Hb_004375_110 0.1059629651 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
7 Hb_009288_010 0.108189987 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_002217_090 0.109281423 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
9 Hb_000156_090 0.110913252 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
10 Hb_009372_020 0.1110393765 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
11 Hb_002965_050 0.1112119301 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
12 Hb_017948_030 0.1134989874 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
13 Hb_022425_060 0.1138987691 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
14 Hb_001500_030 0.114781538 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
15 Hb_001691_040 0.1157209125 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
16 Hb_000012_240 0.1170222778 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
17 Hb_002900_120 0.1176970708 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
18 Hb_010661_010 0.1185838477 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
19 Hb_143766_030 0.1187282208 - - protein with unknown function [Ricinus communis]
20 Hb_002686_230 0.1197169115 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_300 Hb_000417_300 Hb_000912_100 Hb_000912_100 Hb_000417_300--Hb_000912_100 Hb_000656_390 Hb_000656_390 Hb_000417_300--Hb_000656_390 Hb_002876_210 Hb_002876_210 Hb_000417_300--Hb_002876_210 Hb_004128_030 Hb_004128_030 Hb_000417_300--Hb_004128_030 Hb_004375_110 Hb_004375_110 Hb_000417_300--Hb_004375_110 Hb_009288_010 Hb_009288_010 Hb_000417_300--Hb_009288_010 Hb_001691_040 Hb_001691_040 Hb_000912_100--Hb_001691_040 Hb_002217_090 Hb_002217_090 Hb_000912_100--Hb_002217_090 Hb_003975_010 Hb_003975_010 Hb_000912_100--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_000912_100--Hb_002046_060 Hb_000912_100--Hb_002876_210 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_002965_050 Hb_002965_050 Hb_002876_210--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_002876_210--Hb_002900_120 Hb_000711_010 Hb_000711_010 Hb_002876_210--Hb_000711_010 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002876_210--Hb_002217_090 Hb_004128_030--Hb_002217_090 Hb_010661_010 Hb_010661_010 Hb_004128_030--Hb_010661_010 Hb_002686_230 Hb_002686_230 Hb_004128_030--Hb_002686_230 Hb_001500_030 Hb_001500_030 Hb_004128_030--Hb_001500_030 Hb_010407_080 Hb_010407_080 Hb_004128_030--Hb_010407_080 Hb_003747_210 Hb_003747_210 Hb_004128_030--Hb_003747_210 Hb_009372_020 Hb_009372_020 Hb_004375_110--Hb_009372_020 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_008165_020 Hb_008165_020 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_009288_010--Hb_002686_230 Hb_009288_010--Hb_006970_050 Hb_009288_010--Hb_002272_030 Hb_002259_170 Hb_002259_170 Hb_009288_010--Hb_002259_170 Hb_006100_020 Hb_006100_020 Hb_009288_010--Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_009288_010--Hb_002042_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436473 3.84627 2.54864 3.24272 1.0059 0.917139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00648 0.937413 1.81224 1.2272 2.02007

CAGE analysis