Hb_000152_330

Information

Type -
Description -
Location Contig152: 282020-285832
Sequence    

Annotation

kegg
ID cic:CICLE_v10005312mg
description hypothetical protein
nr
ID XP_012090392.1
description PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
swissprot
ID Q9SB31
description AT-hook motif nuclear-localized protein 3 OS=Arabidopsis thaliana GN=AHL3 PE=1 SV=1
trembl
ID A0A067JQV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26216 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at hook motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12982: 281954-286137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_330 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
2 Hb_000270_120 0.0870822163 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
3 Hb_000656_390 0.0891103656 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
4 Hb_000951_130 0.0926120071 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
5 Hb_001411_140 0.1046870866 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
6 Hb_000173_470 0.1100328198 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
7 Hb_001723_100 0.1131591117 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
8 Hb_001699_230 0.1158839417 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
9 Hb_012573_040 0.1160213557 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
10 Hb_000347_400 0.1214859393 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
11 Hb_000997_180 0.1228637362 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001146_010 0.1241557448 - - cystathionine gamma-synthase, putative [Ricinus communis]
13 Hb_020178_040 0.1257932534 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010661_010 0.1260625119 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
15 Hb_001944_020 0.1272179254 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
16 Hb_000061_230 0.1287024867 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_007839_020 0.1289723113 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001619_040 0.1301612287 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
19 Hb_034688_020 0.1315471706 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
20 Hb_002272_030 0.1318373835 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_330 Hb_000152_330 Hb_000270_120 Hb_000270_120 Hb_000152_330--Hb_000270_120 Hb_000656_390 Hb_000656_390 Hb_000152_330--Hb_000656_390 Hb_000951_130 Hb_000951_130 Hb_000152_330--Hb_000951_130 Hb_001411_140 Hb_001411_140 Hb_000152_330--Hb_001411_140 Hb_000173_470 Hb_000173_470 Hb_000152_330--Hb_000173_470 Hb_001723_100 Hb_001723_100 Hb_000152_330--Hb_001723_100 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000270_120--Hb_001723_100 Hb_000086_630 Hb_000086_630 Hb_000270_120--Hb_000086_630 Hb_000270_120--Hb_000656_390 Hb_002542_110 Hb_002542_110 Hb_000270_120--Hb_002542_110 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_000656_390--Hb_001723_100 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_000951_130--Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_000951_130--Hb_020178_040 Hb_000951_130--Hb_000173_470 Hb_000347_400 Hb_000347_400 Hb_000951_130--Hb_000347_400 Hb_000951_130--Hb_002272_030 Hb_002307_270 Hb_002307_270 Hb_001411_140--Hb_002307_270 Hb_001405_160 Hb_001405_160 Hb_001411_140--Hb_001405_160 Hb_000836_380 Hb_000836_380 Hb_001411_140--Hb_000836_380 Hb_001411_140--Hb_000951_130 Hb_000753_230 Hb_000753_230 Hb_001411_140--Hb_000753_230 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_001723_100--Hb_020178_040 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_001723_100--Hb_002272_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.951272 4.51205 1.82004 2.97893 0.674703 0.699923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23691 1.72197 2.97238 1.89455 2.07496

CAGE analysis