Hb_000836_380

Information

Type -
Description -
Location Contig836: 303050-312414
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08530g
description POPTRDRAFT_572304; hypothetical protein
nr
ID XP_011042617.1
description PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
swissprot
ID O23702
description C-terminal binding protein AN OS=Arabidopsis thaliana GN=AN PE=1 SV=1
trembl
ID A0A067JX71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14337 PE=4 SV=1
Gene Ontology
ID GO:0005802
description c-terminal binding protein an

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59956: 302608-308147 , PASA_asmbl_59957: 302608-308147 , PASA_asmbl_59961: 309142-312398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_380 0.0 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
2 Hb_002307_270 0.0443763641 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_001405_160 0.0749524234 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
4 Hb_000017_220 0.0774937725 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
5 Hb_000028_130 0.0827915091 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
6 Hb_004435_030 0.0874491216 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
7 Hb_004916_010 0.0884471619 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
8 Hb_001473_110 0.0896140962 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
9 Hb_000964_130 0.0907747972 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
10 Hb_003906_200 0.0917616395 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
11 Hb_001635_120 0.0918945889 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
12 Hb_002818_030 0.0926853246 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
13 Hb_066920_030 0.0930882064 - - PREDICTED: adagio protein 1 [Jatropha curcas]
14 Hb_019863_070 0.0932458647 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
15 Hb_001217_050 0.0944206025 - - actin binding protein, putative [Ricinus communis]
16 Hb_003544_110 0.0948923078 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
17 Hb_009658_030 0.0953429575 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
18 Hb_112198_010 0.0959146491 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
19 Hb_000347_400 0.0960253009 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
20 Hb_002157_080 0.096974959 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_380 Hb_000836_380 Hb_002307_270 Hb_002307_270 Hb_000836_380--Hb_002307_270 Hb_001405_160 Hb_001405_160 Hb_000836_380--Hb_001405_160 Hb_000017_220 Hb_000017_220 Hb_000836_380--Hb_000017_220 Hb_000028_130 Hb_000028_130 Hb_000836_380--Hb_000028_130 Hb_004435_030 Hb_004435_030 Hb_000836_380--Hb_004435_030 Hb_004916_010 Hb_004916_010 Hb_000836_380--Hb_004916_010 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_001473_110 Hb_001473_110 Hb_001405_160--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_001405_160--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001405_160--Hb_000347_400 Hb_001405_160--Hb_000017_220 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_000028_130--Hb_001635_120 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_112198_010 Hb_112198_010 Hb_004435_030--Hb_112198_010 Hb_001716_040 Hb_001716_040 Hb_004435_030--Hb_001716_040 Hb_008948_020 Hb_008948_020 Hb_004435_030--Hb_008948_020 Hb_000640_040 Hb_000640_040 Hb_004435_030--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_004435_030--Hb_005582_040 Hb_004435_030--Hb_001635_120 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_004916_010--Hb_001716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.29586 17.8876 5.11948 13.3331 5.76932 7.44408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.57064 10.1211 10.9083 9.40134 12.2577

CAGE analysis