Hb_000347_390

Information

Type -
Description -
Location Contig347: 393791-404203
Sequence    

Annotation

kegg
ID rcu:RCOM_0651980
description Exportin-T, putative
nr
ID XP_012068875.1
description PREDICTED: exportin-T [Jatropha curcas]
swissprot
ID Q7PC79
description Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1
trembl
ID A0A067L9D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24693 PE=4 SV=1
Gene Ontology
ID GO:0005829
description exportin-t isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36234: 393777-394300 , PASA_asmbl_36236: 402118-402771 , PASA_asmbl_36237: 403840-404181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_390 0.0 - - PREDICTED: exportin-T [Jatropha curcas]
2 Hb_000024_040 0.0525287534 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
3 Hb_001473_110 0.0602742031 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
4 Hb_003768_050 0.063877628 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
5 Hb_000347_400 0.0639659745 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
6 Hb_005551_020 0.0674730392 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_000017_220 0.0743901108 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
8 Hb_001405_160 0.0748790808 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
9 Hb_001488_180 0.0763218012 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_000028_130 0.0766636394 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
11 Hb_000479_070 0.0770297162 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
12 Hb_005977_070 0.0790053173 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
13 Hb_001167_050 0.0791739182 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
14 Hb_010222_070 0.0816838917 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
15 Hb_022425_060 0.082824129 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
16 Hb_005568_040 0.0843919813 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
17 Hb_002234_090 0.0854086829 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
18 Hb_001545_150 0.0854709842 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
19 Hb_004705_020 0.0858864665 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
20 Hb_000025_280 0.085996523 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_390 Hb_000347_390 Hb_000024_040 Hb_000024_040 Hb_000347_390--Hb_000024_040 Hb_001473_110 Hb_001473_110 Hb_000347_390--Hb_001473_110 Hb_003768_050 Hb_003768_050 Hb_000347_390--Hb_003768_050 Hb_000347_400 Hb_000347_400 Hb_000347_390--Hb_000347_400 Hb_005551_020 Hb_005551_020 Hb_000347_390--Hb_005551_020 Hb_000017_220 Hb_000017_220 Hb_000347_390--Hb_000017_220 Hb_001628_070 Hb_001628_070 Hb_000024_040--Hb_001628_070 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_004586_290 Hb_004586_290 Hb_000024_040--Hb_004586_290 Hb_004705_020 Hb_004705_020 Hb_000024_040--Hb_004705_020 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001488_180 Hb_001488_180 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_001473_110--Hb_000347_400 Hb_002234_090 Hb_002234_090 Hb_003768_050--Hb_002234_090 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_003768_050--Hb_005551_020 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_003768_050--Hb_000017_220 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060 Hb_005551_020--Hb_001473_110 Hb_005551_020--Hb_002234_090 Hb_005551_020--Hb_000347_400 Hb_005551_020--Hb_000024_040 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000017_220--Hb_000025_280 Hb_000017_220--Hb_001473_110 Hb_000017_220--Hb_004705_020 Hb_000017_220--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44203 4.36163 1.71066 2.39308 1.12392 2.11346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27578 1.36116 2.18437 2.54786 2.20975

CAGE analysis