Hb_005551_020

Information

Type -
Description -
Location Contig5551: 41513-46221
Sequence    

Annotation

kegg
ID rcu:RCOM_0437810
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012074324.1
description PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID A0A067KM88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08762 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48493: 43508-45807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005551_020 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
2 Hb_001473_110 0.0667293397 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
3 Hb_000347_390 0.0674730392 - - PREDICTED: exportin-T [Jatropha curcas]
4 Hb_003768_050 0.0680690106 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
5 Hb_002234_090 0.0709771294 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_000347_400 0.0720578873 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
7 Hb_000024_040 0.0762633691 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
8 Hb_000479_070 0.0781747871 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
9 Hb_001488_180 0.0854865894 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_010417_070 0.0860390709 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
11 Hb_005389_160 0.0877517839 - - PREDICTED: casein kinase I [Jatropha curcas]
12 Hb_000008_240 0.0886995986 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000025_280 0.0889162546 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
14 Hb_003835_070 0.0896120253 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
15 Hb_004916_010 0.0912284488 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
16 Hb_001545_150 0.09176573 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
17 Hb_002492_010 0.0918636539 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
18 Hb_003398_080 0.0918747329 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
19 Hb_000649_250 0.0920882625 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
20 Hb_002675_130 0.0925084108 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005551_020 Hb_005551_020 Hb_001473_110 Hb_001473_110 Hb_005551_020--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_005551_020--Hb_000347_390 Hb_003768_050 Hb_003768_050 Hb_005551_020--Hb_003768_050 Hb_002234_090 Hb_002234_090 Hb_005551_020--Hb_002234_090 Hb_000347_400 Hb_000347_400 Hb_005551_020--Hb_000347_400 Hb_000024_040 Hb_000024_040 Hb_005551_020--Hb_000024_040 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001488_180 Hb_001488_180 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_001473_110--Hb_000347_390 Hb_001473_110--Hb_000347_400 Hb_000347_390--Hb_000024_040 Hb_000347_390--Hb_003768_050 Hb_000347_390--Hb_000347_400 Hb_000017_220 Hb_000017_220 Hb_000347_390--Hb_000017_220 Hb_003768_050--Hb_002234_090 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_003768_050--Hb_000017_220 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_004916_010 Hb_004916_010 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_000347_400--Hb_002234_090 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060 Hb_001628_070 Hb_001628_070 Hb_000024_040--Hb_001628_070 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_004586_290 Hb_004586_290 Hb_000024_040--Hb_004586_290 Hb_004705_020 Hb_004705_020 Hb_000024_040--Hb_004705_020 Hb_000024_040--Hb_000479_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2415 61.3279 35.2766 30.6392 15.8847 30.9838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1033 17.0843 33.141 35.1384 30.575

CAGE analysis