Hb_000025_280

Information

Type transcription factor
Description TF Family: C3H
Location Contig25: 250006-257649
Sequence    

Annotation

kegg
ID rcu:RCOM_0883990
description hypothetical protein
nr
ID KDP33861.1
description hypothetical protein JCGZ_07432 [Jatropha curcas]
swissprot
ID Q9LTS7
description Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana GN=EMB1789 PE=2 SV=1
trembl
ID A0A067KCB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07432 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 65 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26081: 251848-252168 , PASA_asmbl_26082: 254414-254785 , PASA_asmbl_26083: 252339-256088 , PASA_asmbl_26085: 256530-257181 , PASA_asmbl_26086: 257480-257636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_280 0.0 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
2 Hb_004483_040 0.0440782008 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
3 Hb_000069_470 0.0554872841 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_000017_220 0.0587162036 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
5 Hb_000317_370 0.0633091314 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
6 Hb_004586_290 0.0660095168 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
7 Hb_031042_050 0.0669149213 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
8 Hb_003768_050 0.0676961857 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
9 Hb_011618_090 0.0686627697 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
10 Hb_001628_070 0.0687877565 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_004705_020 0.0709184147 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
12 Hb_009767_080 0.071756221 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
13 Hb_001473_110 0.0727647992 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_000479_070 0.0731330791 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_000028_130 0.0737377057 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
16 Hb_000024_040 0.0747884124 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
17 Hb_011242_060 0.0772155901 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
18 Hb_002085_030 0.0787163674 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
19 Hb_002007_160 0.0787550506 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
20 Hb_001614_060 0.0787574627 - - hypothetical protein JCGZ_06918 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_280 Hb_000025_280 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000017_220 Hb_000017_220 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050 Hb_004483_040--Hb_000069_470 Hb_011242_060 Hb_011242_060 Hb_004483_040--Hb_011242_060 Hb_002085_030 Hb_002085_030 Hb_004483_040--Hb_002085_030 Hb_000661_130 Hb_000661_130 Hb_004483_040--Hb_000661_130 Hb_005539_090 Hb_005539_090 Hb_004483_040--Hb_005539_090 Hb_000069_470--Hb_011242_060 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_000028_130 Hb_000028_130 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_001473_110 Hb_001473_110 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_002217_170 Hb_002217_170 Hb_000317_370--Hb_002217_170 Hb_011618_090 Hb_011618_090 Hb_000317_370--Hb_011618_090 Hb_003835_070 Hb_003835_070 Hb_000317_370--Hb_003835_070 Hb_000976_210 Hb_000976_210 Hb_000317_370--Hb_000976_210 Hb_000258_160 Hb_000258_160 Hb_000317_370--Hb_000258_160 Hb_005568_040 Hb_005568_040 Hb_004586_290--Hb_005568_040 Hb_003120_080 Hb_003120_080 Hb_004586_290--Hb_003120_080 Hb_001628_070 Hb_001628_070 Hb_004586_290--Hb_001628_070 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_000402_230 Hb_000402_230 Hb_004586_290--Hb_000402_230 Hb_031042_050--Hb_000028_130 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07998 9.81579 3.60113 4.80621 4.0636 4.97694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37704 3.1778 5.01335 6.26948 5.90777

CAGE analysis