Hb_005568_040

Information

Type -
Description -
Location Contig5568: 40557-46973
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03130g
description POPTRDRAFT_723369; hypothetical protein
nr
ID XP_012064913.1
description PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
swissprot
ID O95628
description CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3
trembl
ID A0A067LHQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05602 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna binding family isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48562: 40528-48327 , PASA_asmbl_48563: 40528-48327 , PASA_asmbl_48564: 45476-46002 , PASA_asmbl_48565: 46175-47496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_040 0.0 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
2 Hb_000479_240 0.039694625 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
3 Hb_004645_070 0.0512381923 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
4 Hb_000331_580 0.0516715073 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
5 Hb_000008_240 0.0536660326 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003912_070 0.0564260511 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
7 Hb_004586_290 0.0565737843 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
8 Hb_005542_140 0.0597516877 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
9 Hb_012092_060 0.0612462583 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
10 Hb_001167_050 0.0619087238 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
11 Hb_000003_100 0.0651118038 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
12 Hb_011849_040 0.0666597357 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_003581_170 0.0667526962 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
14 Hb_011287_050 0.0682496991 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
15 Hb_031527_030 0.0692192652 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
16 Hb_000402_230 0.0693228654 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
17 Hb_004517_020 0.0693378776 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
18 Hb_000862_040 0.069884863 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_001951_170 0.0704741539 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_003216_090 0.0707367978 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005568_040 Hb_005568_040 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000479_240--Hb_000008_240 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050 Hb_000010_420 Hb_000010_420 Hb_004645_070--Hb_000010_420 Hb_004645_070--Hb_000331_580 Hb_000635_200 Hb_000635_200 Hb_004645_070--Hb_000635_200 Hb_001167_050 Hb_001167_050 Hb_004645_070--Hb_001167_050 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_000008_240--Hb_002007_110 Hb_012092_060 Hb_012092_060 Hb_003912_070--Hb_012092_060 Hb_011287_050 Hb_011287_050 Hb_003912_070--Hb_011287_050 Hb_003912_070--Hb_000331_580 Hb_043362_010 Hb_043362_010 Hb_003912_070--Hb_043362_010 Hb_003912_070--Hb_000479_240 Hb_003120_080 Hb_003120_080 Hb_004586_290--Hb_003120_080 Hb_001628_070 Hb_001628_070 Hb_004586_290--Hb_001628_070 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_000402_230 Hb_000402_230 Hb_004586_290--Hb_000402_230 Hb_000025_280 Hb_000025_280 Hb_004586_290--Hb_000025_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7042 46.3809 21.5438 29.2209 22.3907 27.0295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1651 12.2289 17.4885 33.3115 23.054

CAGE analysis