Hb_000479_240

Information

Type -
Description -
Location Contig479: 180901-188961
Sequence    

Annotation

kegg
ID rcu:RCOM_0169100
description ubiquitin-protein ligase, putative
nr
ID XP_012084776.1
description PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
swissprot
ID Q9LF41
description Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=2 SV=1
trembl
ID A0A067JTK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19901 PE=4 SV=1
Gene Ontology
ID GO:0000151
description probable ubiquitin conjugation factor e4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44650: 180787-188949 , PASA_asmbl_44651: 180787-188915
cDNA
(Sanger)
(ID:Location)		 032_P04.ab1: 180955-181505

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_240 0.0 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
2 Hb_005568_040 0.039694625 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
3 Hb_001904_030 0.0538476638 - - PREDICTED: importin-5 [Jatropha curcas]
4 Hb_009252_050 0.0561173012 - - protein binding protein, putative [Ricinus communis]
5 Hb_000008_240 0.0579031332 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004645_070 0.0583726197 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
7 Hb_003604_050 0.0584158492 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
8 Hb_000331_580 0.0610366909 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
9 Hb_008948_140 0.0616526118 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
10 Hb_004429_010 0.0627791933 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_005832_010 0.0635702892 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
12 Hb_002027_280 0.0667834423 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
13 Hb_003581_170 0.0674263677 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
14 Hb_011849_040 0.069138256 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_005542_140 0.0693485581 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
16 Hb_004517_020 0.0695628587 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
17 Hb_001673_050 0.0724245606 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_001167_050 0.0727844757 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
19 Hb_001951_170 0.0728220644 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_003912_070 0.0729191267 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_240 Hb_000479_240 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_004645_070 Hb_004645_070 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_000008_240--Hb_000331_580 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_002007_110 Hb_002007_110 Hb_000008_240--Hb_002007_110 Hb_000010_420 Hb_000010_420 Hb_004645_070--Hb_000010_420 Hb_004645_070--Hb_000331_580 Hb_000635_200 Hb_000635_200 Hb_004645_070--Hb_000635_200 Hb_001167_050 Hb_001167_050 Hb_004645_070--Hb_001167_050 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.989 37.06 17.7893 23.937 18.6167 21.1195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3961 10.2315 10.4573 23.3275 19.537

CAGE analysis