Hb_004109_370

Information

Type -
Description -
Location Contig4109: 347471-373769
Sequence    

Annotation

kegg
ID rcu:RCOM_0146290
description transferase, transferring glycosyl groups, putative (EC:2.4.1.34)
nr
ID XP_002528124.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9LXT9
description Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3
trembl
ID B9SQ55
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0146290 PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40679: 347526-373763 , PASA_asmbl_40680: 368938-369205 , PASA_asmbl_40681: 347469-351572 , PASA_asmbl_40682: 351601-373763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_370 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_001085_110 0.0492739633 - - T6D22.2 [Arabidopsis thaliana]
3 Hb_140049_080 0.060260306 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
4 Hb_009252_050 0.0619675259 - - protein binding protein, putative [Ricinus communis]
5 Hb_061878_010 0.0658738585 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
6 Hb_001552_030 0.0663561818 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_000139_130 0.0683912192 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
8 Hb_000243_300 0.0721908651 - - catalytic, putative [Ricinus communis]
9 Hb_000001_170 0.0730522334 - - amino acid transporter, putative [Ricinus communis]
10 Hb_086287_010 0.0736826112 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
11 Hb_007657_020 0.0749798487 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
12 Hb_003124_160 0.0755615214 - - dynamin, putative [Ricinus communis]
13 Hb_002045_250 0.0757721251 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
14 Hb_002475_040 0.075807227 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
15 Hb_001377_160 0.076345985 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
16 Hb_000608_230 0.0763988621 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
17 Hb_005402_040 0.0770954374 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
18 Hb_008397_010 0.0775339264 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
19 Hb_003943_010 0.0780594554 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002686_040 0.0788145392 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]

Gene co-expression network

sample Hb_004109_370 Hb_004109_370 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_001085_110--Hb_009252_050 Hb_000243_300 Hb_000243_300 Hb_001085_110--Hb_000243_300 Hb_003124_160 Hb_003124_160 Hb_001085_110--Hb_003124_160 Hb_007657_020 Hb_007657_020 Hb_001085_110--Hb_007657_020 Hb_008397_010 Hb_008397_010 Hb_001085_110--Hb_008397_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_061878_010--Hb_006355_090 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_061878_010--Hb_000037_220 Hb_000017_230 Hb_000017_230 Hb_001552_030--Hb_000017_230 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001085_290 Hb_001085_290 Hb_001552_030--Hb_001085_290 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_121089_030 Hb_121089_030 Hb_001552_030--Hb_121089_030 Hb_001033_050 Hb_001033_050 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_004668_060 Hb_004668_060 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3716 42.5371 31.7855 45.6806 37.1426 40.8355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2113 13.5649 16.8417 49.2295 34.0789

CAGE analysis