Hb_000139_130

Information

Type -
Description -
Location Contig139: 154087-161567
Sequence    

Annotation

kegg
ID rcu:RCOM_0914010
description chloride channel clc, putative
nr
ID XP_012069592.1
description PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
swissprot
ID P92943
description Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2
trembl
ID B9RTZ4
description Chloride channel protein OS=Ricinus communis GN=RCOM_0914010 PE=3 SV=1
Gene Ontology
ID GO:0016020
description chloride channel protein clc-d isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10623: 154204-161548 , PASA_asmbl_10624: 154897-155033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_130 0.0 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
2 Hb_001033_050 0.0601390183 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
3 Hb_004109_230 0.0620042678 - - heat shock protein binding protein, putative [Ricinus communis]
4 Hb_004668_060 0.0655915228 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
5 Hb_001377_160 0.0667367954 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_061878_010 0.0680619508 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
7 Hb_004109_370 0.0683912192 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_007508_080 0.0691613079 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
9 Hb_008253_020 0.070810204 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
10 Hb_009252_050 0.0716225462 - - protein binding protein, putative [Ricinus communis]
11 Hb_003943_010 0.0719629635 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004531_120 0.0745671635 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
13 Hb_006355_090 0.0748766837 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
14 Hb_004129_070 0.0754124976 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
15 Hb_001489_100 0.0762288855 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
16 Hb_010697_040 0.0787447001 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
17 Hb_140049_080 0.0793742937 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
18 Hb_004204_130 0.0795974403 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
19 Hb_001085_110 0.0801285564 - - T6D22.2 [Arabidopsis thaliana]
20 Hb_000069_480 0.0804789796 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000139_130 Hb_000139_130 Hb_001033_050 Hb_001033_050 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_004668_060 Hb_004668_060 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_001033_050--Hb_004668_060 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_008253_020 Hb_008253_020 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040 Hb_004668_060--Hb_001377_160 Hb_007508_080 Hb_007508_080 Hb_004668_060--Hb_007508_080 Hb_005503_040 Hb_005503_040 Hb_004668_060--Hb_005503_040 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_001377_160--Hb_003943_010 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_140049_080 Hb_140049_080 Hb_061878_010--Hb_140049_080 Hb_006355_090 Hb_006355_090 Hb_061878_010--Hb_006355_090 Hb_061878_010--Hb_004109_370 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_000037_220 Hb_000037_220 Hb_061878_010--Hb_000037_220 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_004109_370--Hb_140049_080 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2213 25.8157 12.1347 25.212 19.0192 20.965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.642 8.57603 8.80498 19.4832 14.0744

CAGE analysis