Hb_000046_070

Information

Type transcription factor
Description TF Family: SBP
Location Contig46: 62976-71757
Sequence    

Annotation

kegg
ID rcu:RCOM_0679130
description Squamosa promoter-binding protein, putative
nr
ID XP_002516839.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q8S9G8
description Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2
trembl
ID B9RSX0
description Squamosa promoter-binding protein, putative OS=Ricinus communis GN=RCOM_0679130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43603: 62978-71709 , PASA_asmbl_43605: 66898-67406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_070 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_002081_120 0.0660832571 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
3 Hb_001147_110 0.0721956985 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
4 Hb_000879_160 0.0751919093 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
5 Hb_001033_050 0.0764249044 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
6 Hb_004668_060 0.0764291599 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
7 Hb_000780_170 0.0777983994 - - PREDICTED: OBERON-like protein [Jatropha curcas]
8 Hb_000917_160 0.0783501482 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
9 Hb_002477_250 0.0791240186 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
10 Hb_008103_020 0.08123466 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
11 Hb_002325_040 0.0820170418 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
12 Hb_000418_140 0.0824308788 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
13 Hb_007508_080 0.0833045039 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
14 Hb_000139_130 0.0835608101 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
15 Hb_004129_070 0.0840473312 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
16 Hb_009112_010 0.0845996678 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
17 Hb_003633_070 0.0846649674 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
18 Hb_000786_040 0.0853730396 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
19 Hb_005260_010 0.0860918562 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
20 Hb_003470_030 0.0867573071 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]

Gene co-expression network

sample Hb_000046_070 Hb_000046_070 Hb_002081_120 Hb_002081_120 Hb_000046_070--Hb_002081_120 Hb_001147_110 Hb_001147_110 Hb_000046_070--Hb_001147_110 Hb_000879_160 Hb_000879_160 Hb_000046_070--Hb_000879_160 Hb_001033_050 Hb_001033_050 Hb_000046_070--Hb_001033_050 Hb_004668_060 Hb_004668_060 Hb_000046_070--Hb_004668_060 Hb_000780_170 Hb_000780_170 Hb_000046_070--Hb_000780_170 Hb_003470_030 Hb_003470_030 Hb_002081_120--Hb_003470_030 Hb_002666_080 Hb_002666_080 Hb_002081_120--Hb_002666_080 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_002081_120--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002081_120--Hb_002477_250 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_008253_030 Hb_008253_030 Hb_001147_110--Hb_008253_030 Hb_002276_240 Hb_002276_240 Hb_001147_110--Hb_002276_240 Hb_001767_140 Hb_001767_140 Hb_001147_110--Hb_001767_140 Hb_184798_080 Hb_184798_080 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_000935_090 Hb_000935_090 Hb_000879_160--Hb_000935_090 Hb_000796_190 Hb_000796_190 Hb_000879_160--Hb_000796_190 Hb_004429_160 Hb_004429_160 Hb_000879_160--Hb_004429_160 Hb_000025_650 Hb_000025_650 Hb_000879_160--Hb_000025_650 Hb_007558_120 Hb_007558_120 Hb_000879_160--Hb_007558_120 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_001033_050--Hb_004668_060 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_008253_020 Hb_008253_020 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_001377_160 Hb_001377_160 Hb_004668_060--Hb_001377_160 Hb_007508_080 Hb_007508_080 Hb_004668_060--Hb_007508_080 Hb_004668_060--Hb_000139_130 Hb_005503_040 Hb_005503_040 Hb_004668_060--Hb_005503_040 Hb_000780_170--Hb_008253_030 Hb_000120_660 Hb_000120_660 Hb_000780_170--Hb_000120_660 Hb_000780_170--Hb_001033_050 Hb_000780_170--Hb_001147_110 Hb_000418_140 Hb_000418_140 Hb_000780_170--Hb_000418_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3731 40.4315 21.5179 27.0508 27.7347 29.2058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7437 10.9839 10.2665 22.5622 20.1784

CAGE analysis