Hb_000025_650

Information

Type -
Description -
Location Contig25: 602727-619083
Sequence    

Annotation

kegg
ID rcu:RCOM_0063290
description exosome complex exonuclease rrp45, putative
nr
ID XP_002531128.1
description exosome complex exonuclease rrp45, putative [Ricinus communis]
swissprot
ID Q9M209
description Protein ECERIFERUM 7 OS=Arabidopsis thaliana GN=CER7 PE=2 SV=1
trembl
ID B9SYQ9
description Exosome complex exonuclease rrp45, putative OS=Ricinus communis GN=RCOM_0063290 PE=4 SV=1
Gene Ontology
ID GO:0004527
description protein rrp45a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26158: 602835-619384 , PASA_asmbl_26159: 603107-603508 , PASA_asmbl_26161: 617586-618599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_650 0.0 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
2 Hb_000935_090 0.0664850072 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
3 Hb_000347_570 0.0710827848 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
4 Hb_001178_150 0.0750252152 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
5 Hb_017895_020 0.0760822662 - - Vacuolar protein sorting protein, putative [Ricinus communis]
6 Hb_000031_290 0.0762332108 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
7 Hb_004429_160 0.0795618913 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
8 Hb_009151_020 0.0804717408 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
9 Hb_001473_090 0.084128032 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
10 Hb_000329_130 0.0841668411 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_005892_030 0.0863817158 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_001417_050 0.0875889352 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
13 Hb_000914_080 0.087975449 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000879_160 0.0882026472 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
15 Hb_028872_120 0.0886190556 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
16 Hb_002301_270 0.0899565032 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
17 Hb_000029_320 0.0904885337 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
18 Hb_002749_110 0.0907559616 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
19 Hb_000796_190 0.0916306756 - - hypothetical protein F383_31148 [Gossypium arboreum]
20 Hb_001369_350 0.0921164106 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_650 Hb_000025_650 Hb_000935_090 Hb_000935_090 Hb_000025_650--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_000025_650--Hb_000347_570 Hb_001178_150 Hb_001178_150 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_004429_160 Hb_004429_160 Hb_000025_650--Hb_004429_160 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000935_090--Hb_004429_160 Hb_000347_570--Hb_001178_150 Hb_009151_020 Hb_009151_020 Hb_000347_570--Hb_009151_020 Hb_001473_090 Hb_001473_090 Hb_000347_570--Hb_001473_090 Hb_020665_030 Hb_020665_030 Hb_000347_570--Hb_020665_030 Hb_000347_570--Hb_001417_050 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_001473_090 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_017895_020--Hb_000329_130 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_001085_320 Hb_001085_320 Hb_000031_290--Hb_001085_320 Hb_002477_130 Hb_002477_130 Hb_000031_290--Hb_002477_130 Hb_000031_280 Hb_000031_280 Hb_000031_290--Hb_000031_280 Hb_002749_110 Hb_002749_110 Hb_000031_290--Hb_002749_110 Hb_002093_030 Hb_002093_030 Hb_000031_290--Hb_002093_030 Hb_000191_130 Hb_000191_130 Hb_004429_160--Hb_000191_130 Hb_003040_020 Hb_003040_020 Hb_004429_160--Hb_003040_020 Hb_000032_010 Hb_000032_010 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.927 9.09558 5.58568 6.50126 15.8681 12.9042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19281 3.21482 2.39813 4.86917 6.56054

CAGE analysis