Hb_001900_120

Information

Type -
Description -
Location Contig1900: 218227-233755
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01320g
description hypothetical protein
nr
ID XP_012070500.1
description PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02767 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18950: 218220-233892 , PASA_asmbl_18951: 224230-224405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001900_120 0.0 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
2 Hb_017895_020 0.0538848603 - - Vacuolar protein sorting protein, putative [Ricinus communis]
3 Hb_002675_040 0.061945661 - - ran-binding protein, putative [Ricinus communis]
4 Hb_000329_130 0.0748382464 - - beta-tubulin cofactor d, putative [Ricinus communis]
5 Hb_001050_010 0.0750106186 - - Advillin [Gossypium arboreum]
6 Hb_011609_170 0.0787611287 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_008725_130 0.079390485 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
8 Hb_000417_160 0.0827033093 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
9 Hb_009620_030 0.0841824458 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
10 Hb_147737_010 0.0865352664 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
11 Hb_000922_140 0.0879368635 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
12 Hb_033594_020 0.0879649347 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
13 Hb_028872_120 0.0892637049 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
14 Hb_010315_090 0.0896950043 - - suppressor of ty, putative [Ricinus communis]
15 Hb_002249_120 0.0917508783 - - RNA-binding protein, putative [Ricinus communis]
16 Hb_015026_050 0.091826277 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_140049_020 0.0923411342 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
18 Hb_003540_160 0.0926098454 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
19 Hb_001235_200 0.0928257949 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000868_060 0.0931908318 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001900_120 Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_001900_120--Hb_017895_020 Hb_002675_040 Hb_002675_040 Hb_001900_120--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_001900_120--Hb_011609_170 Hb_008725_130 Hb_008725_130 Hb_001900_120--Hb_008725_130 Hb_017895_020--Hb_002675_040 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_002675_040--Hb_000329_130 Hb_002675_040--Hb_008725_130 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_000868_060 Hb_000868_060 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_011609_170--Hb_008725_130 Hb_005408_020 Hb_005408_020 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_011609_170--Hb_000868_060 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_008725_130--Hb_000329_130 Hb_008725_130--Hb_005408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.6423 32.396 27.4073 20.5447 54.5767 47.9603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1068 7.87486 18.5271 22.5681 20.0915

CAGE analysis